Factsheet for GSMUA_Achr6P01290_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, extracellular

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025079.1-P	Field mustard	plastid	83.64	63.89
CDY39425	Canola	plastid	83.64	63.89
CDY38981	Canola	plastid	83.64	63.23
AT5G45390.1	Thale cress	plastid	83.64	63.01
VIT_12s0028g01250.t01	Wine grape	plastid	82.73	62.54
KRH39679	Soybean	nucleus, plastid	84.09	60.46
KRH76388	Soybean	nucleus, plastid	83.64	60.13
EER94414	Sorghum	plastid	78.18	59.52
PGSC0003DMT400079259	Potato	plastid	80.0	58.86
Os10t0580800-01	Rice	plastid	78.18	58.7
Solyc08g075750.2.1	Tomato	plastid	78.64	57.28
TraesCS1B01G213300.1	Wheat	plastid	76.82	57.09
TraesCS1D01G202100.1	Wheat	plastid	76.36	56.76
TraesCS1A01G198400.1	Wheat	plastid	75.91	56.42
Zm00001d030149_P001	Maize	mitochondrion	78.18	54.09
GSMUA_Achr4P06560_001	Banana	cytosol, plastid, vacuole	15.45	50.0
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	18.64	31.54
GSMUA_Achr5P10890_001	Banana	plastid	37.73	31.09
GSMUA_AchrUn_...	Banana	cytosol	28.18	30.54
GSMUA_Achr8P22320_001	Banana	plastid	40.91	30.0
GSMUA_Achr4P13550_001	Banana	plastid	46.82	27.91
GSMUA_Achr8P05270_001	Banana	plastid	30.45	25.19
GSMUA_Achr8P14970_001	Banana	mitochondrion	27.27	24.49
GSMUA_Achr9P24480_001	Banana	plastid	32.73	21.62
GSMUA_Achr1P08260_001	Banana	plastid	26.82	20.56
GSMUA_Achr3P08150_001	Banana	plastid	29.55	19.29
GSMUA_Achr2P08390_001	Banana	plastid	27.27	15.08

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009532
GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009840
GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538
GO:GO:0048510	EnsemblPlantsGene:GSMUA_Achr6G01290_001	EnsemblPlants:GSMUA_Achr6P01290_001	EnsemblPlants:GSMUA_Achr6T01290_001	UniProt:M0T377	HAMAP:MF_00444
PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF24	SUPFAM:SSF52096
UniParc:UPI000294CC9A	:	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G01290_001]

Coordinates

chr6:-:855942..858259

Molecular Weight (calculated)

24196.3 Da

IEP (calculated)

4.815

GRAVY (calculated)

-0.061

Length

220 amino acids

Sequence
(BLAST)

001: MRGAESDVMG LLLRERIVFL GSSIDDFVAD AIISQLLLLD AQDHTKDIRL FINSAGGSLS ATMAVYDVVQ LVRADVSTIA LGFAASTASI ILGGGTKGKR
101: LAMPNTRIMI HQPLGGASGQ ALDVEIQAKE IMHNKDNVTR IISGFTGRTF KQVEKDIDRD RYMSPIEGVE YGIIDGVIDR DSIISLMPVP DKVKPKLNYD
201: EMYKDPKKYF TPEVPDDEIY

Best Arabidopsis Sequence Match ( AT5G45390.1 )
(BLAST)

001: MGTLSLSSSL KPSLVSSRLN SSSSASSSSF PKPNNLYLKP TKLISPPLRT TSPSPLRFAN ASIEMSQTQE SAIRGAESDV MGLLLRERIV FLGSSIDDFV
101: ADAIMSQLLL LDAKDPKKDI KLFINSPGGS LSATMAIYDV VQLVRADVST IALGIAASTA SIILGAGTKG KRFAMPNTRI MIHQPLGGAS GQAIDVEIQA
201: KEVMHNKNNV TSIIAGCTSR SFEQVLKDID RDRYMSPIEA VEYGLIDGVI DGDSIIPLEP VPDRVKPRVN YEEISKDPMK FLTPEIPDDE IY

Arabidopsis Description

CLPP4ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94B60]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.