Factsheet for TraesCS1D01G202100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G213300.1	Wheat	plastid	98.99	98.99
TraesCS1A01G198400.1	Wheat	plastid	97.64	97.64
EER94414	Sorghum	plastid	78.72	80.62
Os10t0580800-01	Rice	plastid	78.38	79.18
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	56.76	76.36
Zm00001d030149_P001	Maize	mitochondrion	77.7	72.33
Bra025079.1-P	Field mustard	plastid	57.77	59.38
CDY39425	Canola	plastid	57.77	59.38
PGSC0003DMT400079259	Potato	plastid	59.8	59.2
CDY38981	Canola	plastid	58.11	59.11
AT5G45390.1	Thale cress	plastid	58.11	58.9
VIT_12s0028g01250.t01	Wine grape	plastid	57.77	58.76
KRH39679	Soybean	nucleus, plastid	59.12	57.19
Solyc08g075750.2.1	Tomato	plastid	58.11	56.95
KRH76388	Soybean	nucleus, plastid	58.45	56.54
TraesCS4D01G184400.1	Wheat	plastid	34.12	35.82
TraesCS2D01G271200.1	Wheat	cytosol	23.31	34.85
TraesCS5D01G009400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	23.31	34.33
TraesCS3D01G053300.1	Wheat	cytosol	25.0	34.26
TraesCS1D01G435100.1	Wheat	cytosol	24.66	33.8
TraesCS1D01G182500.1	Wheat	cytosol, peroxisome, plastid	20.27	33.15
TraesCS6D01G214700.1	Wheat	plastid	29.39	29.39
TraesCS4D01G157200.1	Wheat	plastid	25.68	28.57
TraesCS2D01G372600.1	Wheat	plastid	28.38	28.0
TraesCS7D01G072100.1	Wheat	plastid	23.99	23.83
TraesCS3D01G191100.2	Wheat	plastid	23.65	22.36
TraesCS4D01G167900.1	Wheat	golgi, plastid	22.64	19.88
TraesCS1D01G445300.1	Wheat	plastid	23.65	17.99

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0019538	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00382
PANTHER:PTHR10381	PANTHER:PTHR10381:SF24	SUPFAM:SSF52096	EnsemblPlantsGene:TraesCS1D01G202100	EnsemblPlants:TraesCS1D01G202100.1	TIGR:cd07017
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:285052625..285055244

Molecular Weight (calculated)

31842.4 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.001

Length

296 amino acids

Sequence
(BLAST)

001: MAVTSASAAA SLSVTAAAHR LRHRQLYACA RGPAAQPHPL LKLNRRSYAV SASSAAAMSP LSLWEGQGIR AELDAPGGVA SGDVMGLLLR ERIIFLGNEI
101: EDFLADAVVS QLLLLDAMDS ESDIRLFVNS PGGSLSATMA IFDVMQLVRA DVSTIGMGIA GSTASIILGG GAKGKRFAMP NTRIMMHQPV GGASGQALDV
201: EVQAKEILAS KRNVIRLISG FTGRTLEQVE KDIDRDRYMG PLEAVDYGII DGVIDEDSIM PLEPVPERVK PKYNYEEMYK DPQKFLTPHV PDDEIY

Best Arabidopsis Sequence Match ( AT5G45390.1 )
(BLAST)

001: MGTLSLSSSL KPSLVSSRLN SSSSASSSSF PKPNNLYLKP TKLISPPLRT TSPSPLRFAN ASIEMSQTQE SAIRGAESDV MGLLLRERIV FLGSSIDDFV
101: ADAIMSQLLL LDAKDPKKDI KLFINSPGGS LSATMAIYDV VQLVRADVST IALGIAASTA SIILGAGTKG KRFAMPNTRI MIHQPLGGAS GQAIDVEIQA
201: KEVMHNKNNV TSIIAGCTSR SFEQVLKDID RDRYMSPIEA VEYGLIDGVI DGDSIIPLEP VPDRVKPRVN YEEISKDPMK FLTPEIPDDE IY

Arabidopsis Description

CLPP4ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94B60]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.