Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G271200.1 | Wheat | cytosol | 87.06 | 88.38 |
| TraesCS3D01G053300.1 | Wheat | cytosol | 89.05 | 82.87 |
| TraesCS1D01G435100.1 | Wheat | cytosol | 89.05 | 82.87 |
| TraesCS1D01G182500.1 | Wheat | cytosol, peroxisome, plastid | 71.14 | 79.01 |
| TraesCS3A01G215600.1 | Wheat | cytosol | 62.19 | 67.93 |
| PGSC0003DMT400055547 | Potato | cytosol | 22.39 | 65.22 |
| ATCG00670.1 | Thale cress | cytosol | 56.72 | 58.16 |
| PGSC0003DMT400013567 | Potato | cytosol, endoplasmic reticulum, mitochondrion | 28.36 | 54.29 |
| Solyc01g007490.2.1 | Tomato | plastid | 52.24 | 50.97 |
| Solyc09g065790.1.1 | Tomato | cytosol | 29.35 | 33.52 |
| TraesCS4D01G157200.1 | Wheat | plastid | 31.84 | 24.06 |
| TraesCS1D01G202100.1 | Wheat | plastid | 34.33 | 23.31 |
| TraesCS4D01G184400.1 | Wheat | plastid | 31.34 | 22.34 |
| TraesCS2D01G372600.1 | Wheat | plastid | 30.35 | 20.33 |
| TraesCS6D01G214700.1 | Wheat | plastid | 29.85 | 20.27 |
| TraesCS7D01G072100.1 | Wheat | plastid | 29.85 | 20.13 |
| TraesCS3D01G191100.2 | Wheat | plastid | 22.89 | 14.7 |
| TraesCS4D01G167900.1 | Wheat | golgi, plastid | 21.89 | 13.06 |
| TraesCS1D01G445300.1 | Wheat | plastid | 21.89 | 11.31 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G009400.1 | EnsemblPlantsGene:TraesCS5D01G009400 | Gene3D:3.90.226.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0019538 | InterPro:ClpP |
| InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | InterPro:ClpP_His_AS | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF19 | PFAM:PF00574 |
| PRINTS:PR00127 | ScanProsite:PS00382 | SUPFAM:SSF52096 | TIGR:cd07017 | MapMan:50.3.4 | : |
Description
No Description!
Coordinates
chr5D:+:6202612..6203217
Molecular Weight (calculated)
23019.0 Da
IEP (calculated)
4.800
GRAVY (calculated)
0.093
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKRLGLTYT MLCIEKGHFF DQEIRCEITN HITGLMVYLS IEDGISDIFL FINSPGGWLI SGMAIFDTMQ TVTPDIYTIC LGIAASTASF ILLGGEPTKR
101: IAFPHARIML HQPASAYYRA RTPEFLLEVE ELHKVREMIT RVYAVRTGKP FWVVSEDMER DVFMSADEAK AYGLVDIVGD EMIDKHCDTD LVWFPEMFKD
201: W
101: IAFPHARIML HQPASAYYRA RTPEFLLEVE ELHKVREMIT RVYAVRTGKP FWVVSEDMER DVFMSADEAK AYGLVDIVGD EMIDKHCDTD LVWFPEMFKD
201: W
001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ
Arabidopsis Description
CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.