Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G044510.1 | Barley | extracellular | 35.06 | 31.03 |
| TraesCS4D01G157200.1 | Wheat | plastid | 96.1 | 27.82 |
| Os03t0411500-01 | Rice | plastid | 92.21 | 27.41 |
| TraesCS4B01G165100.1 | Wheat | plastid | 93.51 | 27.07 |
| TraesCS4A01G149900.1 | Wheat | plastid | 96.1 | 26.71 |
| HORVU4Hr1G038160.2 | Barley | plastid | 96.1 | 26.15 |
| EES07709 | Sorghum | plastid | 92.21 | 25.72 |
| HORVU3Hr1G053800.1 | Barley | endoplasmic reticulum | 37.66 | 20.86 |
| GSMUA_Achr8P05270_001 | Banana | plastid | 70.13 | 20.3 |
| VIT_03s0063g02300.t01 | Wine grape | plastid | 70.13 | 20.07 |
| CDY31211 | Canola | plastid | 70.13 | 20.0 |
| CDY21009 | Canola | plastid | 70.13 | 20.0 |
| Bra016816.1-P | Field mustard | plastid | 70.13 | 20.0 |
| CDY34832 | Canola | plastid | 70.13 | 19.78 |
| Bra031777.1-P | Field mustard | plastid | 70.13 | 19.78 |
| Solyc10g051310.1.1 | Tomato | plastid | 70.13 | 19.64 |
| PGSC0003DMT400084282 | Potato | plastid | 70.13 | 19.64 |
| KRH29491 | Soybean | plastid | 67.53 | 19.05 |
| AT1G11750.2 | Thale cress | plastid | 70.13 | 18.69 |
| KRH24490 | Soybean | plastid | 66.23 | 18.68 |
| CDY34630 | Canola | plastid | 42.86 | 18.54 |
| HORVU3Hr1G044750.2 | Barley | cytosol | 24.68 | 13.77 |
| AGP50779 | Barley | cytosol, peroxisome, plastid | 37.66 | 13.43 |
| HORVU0Hr1G026150.1 | Barley | cytosol, peroxisome, plastid | 37.66 | 13.43 |
| HORVU0Hr1G027550.1 | Barley | cytosol | 37.66 | 13.43 |
| HORVU0Hr1G029900.1 | Barley | cytosol, peroxisome, plastid | 37.66 | 13.43 |
| HORVU0Hr1G036940.1 | Barley | cytosol, peroxisome, plastid | 37.66 | 13.43 |
| HORVU0Hr1G037900.1 | Barley | cytosol, peroxisome, plastid | 37.66 | 13.43 |
| HORVU7Hr1G065830.1 | Barley | cytosol | 37.66 | 13.43 |
| HORVU6Hr1G049380.1 | Barley | cytosol, peroxisome, plastid | 37.66 | 13.43 |
| HORVU6Hr1G037220.1 | Barley | cytosol, peroxisome, plastid | 37.66 | 13.43 |
| HORVU6Hr1G023010.1 | Barley | cytosol, peroxisome, plastid | 37.66 | 13.43 |
| HORVU5Hr1G065060.1 | Barley | cytosol | 37.66 | 13.43 |
| HORVU3Hr1G044530.1 | Barley | plastid | 44.16 | 11.15 |
| HORVU4Hr1G053660.1 | Barley | plastid | 40.26 | 10.13 |
| HORVU2Hr1G090470.1 | Barley | plastid | 41.56 | 9.47 |
| HORVU3Hr1G038610.4 | Barley | plastid | 27.27 | 7.39 |
| HORVU6Hr1G059510.8 | Barley | cytosol, peroxisome | 41.56 | 7.39 |
| HORVU4Hr1G046480.1 | Barley | plastid | 33.77 | 6.99 |
| HORVU7Hr1G017670.1 | Barley | plastid | 28.57 | 6.83 |
| HORVU1Hr1G094480.1 | Barley | plastid | 23.38 | 4.25 |
Protein Annotations
| Gene3D:3.90.226.10 | MapMan:35.1 | UniProt:A0A287LZZ0 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf |
| InterPro:ClpP_His_AS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:HORVU3Hr1G083440 | EnsemblPlants:HORVU3Hr1G083440.1 | PFAM:PF00574 |
| PRINTS:PR00127 | ScanProsite:PS00382 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF8 | SUPFAM:SSF52096 | UniParc:UPI000B47108D |
Description
ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A287LZZ0]
Coordinates
chrchr3H:+:603361393..603362127
Molecular Weight (calculated)
7944.6 Da
IEP (calculated)
9.233
GRAVY (calculated)
-0.166
Length
77 amino acids
Sequence
(BLAST)
(BLAST)
1: TPKVGTVCFG VVASQAAIIL AGGEKGMRYA MPNARVMIHQ PQGGSEGNTE EVRRQVGETI YARDKVDKMF AAFTXXX
001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP SSLPLPILNI LKSSTVYFIF GVIEAKKGNP
101: PVMPSVMTPG GPLDLSSVLF RNRIIFIGQP INAQVAQRVI SQLVTLASID DKSDILMYLN CPGGSTYSVL AIYDCMSWIK PKVGTVAFGV AASQGALLLA
201: GGEKGMRYAM PNTRVMIHQP QTGCGGHVED VRRQVNEAIE ARQKIDRMYA AFTGQPLEKV QQYTERDRFL SASEALEFGL IDGLLETEY
101: PVMPSVMTPG GPLDLSSVLF RNRIIFIGQP INAQVAQRVI SQLVTLASID DKSDILMYLN CPGGSTYSVL AIYDCMSWIK PKVGTVAFGV AASQGALLLA
201: GGEKGMRYAM PNTRVMIHQP QTGCGGHVED VRRQVNEAIE ARQKIDRMYA AFTGQPLEKV QQYTERDRFL SASEALEFGL IDGLLETEY
Arabidopsis Description
CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.