Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03582 | Canola | plastid | 86.28 | 50.13 |
| CDY59367 | Canola | plastid | 85.4 | 49.74 |
| AT1G49970.1 | Thale cress | plastid | 83.63 | 48.84 |
| KRH35674 | Soybean | plastid | 69.91 | 42.47 |
| KRG91103 | Soybean | plastid | 69.47 | 42.2 |
| VIT_03s0091g00700.t01 | Wine grape | plastid | 69.47 | 40.46 |
| GSMUA_Achr2P08390_001 | Banana | plastid | 68.58 | 38.94 |
| PGSC0003DMT400065220 | Potato | plastid | 66.81 | 38.42 |
| Solyc10g049710.1.1 | Tomato | plastid | 64.16 | 37.76 |
| CDY71339 | Canola | endoplasmic reticulum | 18.14 | 32.03 |
| Os05t0592100-01 | Rice | plastid | 52.21 | 30.57 |
| Zm00001d039167_P001 | Maize | plastid | 52.21 | 30.41 |
| EES20050 | Sorghum | plastid | 52.21 | 30.41 |
| TraesCS1A01G437500.2 | Wheat | plastid | 51.33 | 29.97 |
| TraesCS1B01G472100.1 | Wheat | plastid | 50.88 | 29.87 |
| TraesCS1D01G445300.1 | Wheat | plastid | 50.88 | 29.56 |
| HORVU1Hr1G094480.1 | Barley | plastid | 51.77 | 27.59 |
| CDY71709 | Canola | endoplasmic reticulum, extracellular | 21.68 | 25.65 |
| CDY43468 | Canola | plastid | 18.58 | 23.86 |
| CDY31112 | Canola | plastid | 34.07 | 23.84 |
| CDY32150 | Canola | plastid | 34.07 | 23.69 |
| CDX69964 | Canola | plastid | 14.16 | 21.33 |
| CDY35605 | Canola | plastid | 27.43 | 20.46 |
| CDY09652 | Canola | plastid | 27.43 | 20.39 |
| CDY42955 | Canola | plastid | 27.43 | 20.33 |
| CDY09656 | Canola | plastid | 27.43 | 20.26 |
| CDX90492 | Canola | plastid | 27.43 | 20.2 |
| CDY02210 | Canola | mitochondrion | 20.35 | 19.57 |
| CDY21523 | Canola | mitochondrion | 20.35 | 19.33 |
| CDY68541 | Canola | cytosol | 10.62 | 19.2 |
| CDY61915 | Canola | mitochondrion | 19.91 | 19.07 |
| CDX95009 | Canola | plastid | 25.22 | 18.57 |
| CDY51306 | Canola | plastid | 19.47 | 15.88 |
| CDX96137 | Canola | plastid | 21.24 | 15.34 |
| CDX89962 | Canola | plastid | 19.91 | 15.31 |
| CDY69283 | Canola | plastid | 14.16 | 15.24 |
| CDY36212 | Canola | plastid | 20.8 | 15.02 |
| CDY15250 | Canola | plastid | 19.91 | 14.71 |
| CDY39425 | Canola | plastid | 18.58 | 14.58 |
| CDY21009 | Canola | plastid | 17.26 | 14.44 |
| CDY31211 | Canola | plastid | 17.26 | 14.44 |
| CDY38981 | Canola | plastid | 18.58 | 14.43 |
| CDY26563 | Canola | plastid | 17.7 | 14.39 |
| CDY30078 | Canola | plastid | 17.7 | 14.34 |
| CDX98066 | Canola | plastid | 17.7 | 14.34 |
| CDY34832 | Canola | plastid | 17.26 | 14.29 |
| CDY15433 | Canola | plastid | 19.03 | 14.14 |
| CDY15997 | Canola | plastid | 17.7 | 8.2 |
| CDY34630 | Canola | plastid | 4.87 | 6.18 |
Protein Annotations
| MapMan:19.4.2.9.2 | Gene3D:3.90.226.10 | GO:A0A078IAN6 | UniProt:A0A078IAN6 | EnsemblPlants:CDY46278 | ProteinID:CDY46278 |
| ProteinID:CDY46278.1 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004252 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00083635001 | PFAM:PF00574 | PRINTS:PR00127 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF18 | SUPFAM:SSF52096 |
| UniParc:UPI0004EDB317 | SEG:seg | : | : | : | : |
Description
BnaC05g50670DATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A078IAN6]
Coordinates
chrLK032657:+:124558..126096
Molecular Weight (calculated)
24786.0 Da
IEP (calculated)
9.036
GRAVY (calculated)
-0.185
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMTEDNPVR VSESISSRRN YLDNGGIWSM SGMNVADPRR YIMSVQMYRG GGSARPRTAP PDLPSLLLDA RICYLGMPVR PPRAIKPTCF LSAQALILLL
101: LFMWLDYDNP ANPIYLYINS PGTQNEKMET VGSETEAYAI ADTISYCKSD VYTINCGMAF GQAAMLLSLG KKGYRAVQPH SSTKLYLPKV NRSSGAAIDM
201: WIKDYDGSLA MGRPGGSNPT ASAGLR
101: LFMWLDYDNP ANPIYLYINS PGTQNEKMET VGSETEAYAI ADTISYCKSD VYTINCGMAF GQAAMLLSLG KKGYRAVQPH SSTKLYLPKV NRSSGAAIDM
201: WIKDYDGSLA MGRPGGSNPT ASAGLR
001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR
Arabidopsis Description
CLPR1ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.