Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12410.1 | CDY01754 | AT1G69690.1 | 21798944 |
| AT1G12410.1 | CDY28576 | AT1G69690.1 | 21798944 |
| AT1G12410.1 | CDY28577 | AT1G69690.1 | 21798944 |
| AT1G12410.1 | CDY68276 | AT1G69690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69283 | Canola | plastid | 66.4 | 39.52 |
| AT1G12410.1 | Thale cress | plastid | 83.2 | 37.28 |
| CDY30078 | Canola | plastid | 83.2 | 37.28 |
| CDX98066 | Canola | plastid | 83.2 | 37.28 |
| CDY26563 | Canola | plastid | 82.4 | 37.05 |
| VIT_02s0025g05140.t01 | Wine grape | plastid | 68.0 | 29.21 |
| Solyc08g079620.2.1 | Tomato | plastid | 67.2 | 29.07 |
| GSMUA_Achr1P08260_001 | Banana | plastid | 65.6 | 28.57 |
| PGSC0003DMT400010090 | Potato | cytosol, plastid | 65.6 | 28.37 |
| KRH57313 | Soybean | endoplasmic reticulum, extracellular | 68.8 | 27.56 |
| Bra026972.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 85.6 | 27.37 |
| KXG19238 | Sorghum | plastid | 60.8 | 26.03 |
| KRH04045 | Soybean | mitochondrion | 69.6 | 25.36 |
| Os06t0136800-01 | Rice | plastid | 60.0 | 25.25 |
| TraesCS7D01G072100.1 | Wheat | plastid | 58.4 | 24.5 |
| TraesCS7A01G076400.1 | Wheat | plastid | 58.4 | 24.33 |
| Zm00001d045430_P002 | Maize | plastid | 60.8 | 23.46 |
| TraesCS4A01G374600.2 | Wheat | plastid | 58.4 | 23.1 |
| HORVU7Hr1G017670.1 | Barley | plastid | 59.2 | 22.98 |
| CDY15997 | Canola | plastid | 82.4 | 21.11 |
| CDY71339 | Canola | endoplasmic reticulum | 19.2 | 18.75 |
| CDX69964 | Canola | plastid | 22.4 | 18.67 |
| CDY21523 | Canola | mitochondrion | 34.4 | 18.07 |
| CDY61915 | Canola | mitochondrion | 32.8 | 17.37 |
| CDY71709 | Canola | endoplasmic reticulum, extracellular | 26.4 | 17.28 |
| CDY02210 | Canola | mitochondrion | 32.0 | 17.02 |
| CDY43468 | Canola | plastid | 21.6 | 15.34 |
| CDY21009 | Canola | plastid | 31.2 | 14.44 |
| CDY31211 | Canola | plastid | 31.2 | 14.44 |
| CDY51306 | Canola | plastid | 32.0 | 14.44 |
| CDY34832 | Canola | plastid | 31.2 | 14.29 |
| CDY39425 | Canola | plastid | 32.0 | 13.89 |
| CDY38981 | Canola | plastid | 32.0 | 13.75 |
| CDX89962 | Canola | plastid | 32.0 | 13.61 |
| CDY15433 | Canola | plastid | 32.0 | 13.16 |
| CDY15250 | Canola | plastid | 32.0 | 13.07 |
| CDY35605 | Canola | plastid | 28.8 | 11.88 |
| CDY09652 | Canola | plastid | 28.8 | 11.84 |
| CDY42955 | Canola | plastid | 28.8 | 11.8 |
| CDY09656 | Canola | plastid | 28.8 | 11.76 |
| CDX90492 | Canola | plastid | 28.8 | 11.73 |
| CDX96137 | Canola | plastid | 28.0 | 11.18 |
| CDY36212 | Canola | plastid | 28.0 | 11.18 |
| CDY31112 | Canola | plastid | 28.8 | 11.15 |
| CDY32150 | Canola | plastid | 28.0 | 10.77 |
| CDY46278 | Canola | cytosol | 19.2 | 10.62 |
| CDX95009 | Canola | plastid | 25.6 | 10.42 |
| CDY59367 | Canola | plastid | 26.4 | 8.51 |
| CDY03582 | Canola | plastid | 25.6 | 8.23 |
| CDY34630 | Canola | plastid | 11.2 | 7.87 |
Protein Annotations
| Gene3D:3.90.226.10 | MapMan:35.1 | GO:A0A078JSB6 | UniProt:A0A078JSB6 | EnsemblPlants:CDY68541 | ProteinID:CDY68541 |
| ProteinID:CDY68541.1 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004252 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00075411001 | PFAM:PF00574 | PRINTS:PR00127 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF15 | SUPFAM:SSF52096 |
| UniParc:UPI0004EE3482 | SEG:seg | : | : | : | : |
Description
BnaA07g36020DATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A078JSB6]
Coordinates
chrLK037521:+:321..4202
Molecular Weight (calculated)
14119.0 Da
IEP (calculated)
4.811
GRAVY (calculated)
-0.145
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSLIILLQY RERVIFNGQN IDEEFSNNIL ATMLYLDTLD DSRRIYMYLN GPGGDLTPSL ASYDTMKSLK SFLLAAAEKH QWFAMPLLRI ALQAGPAAGA
101: ARGQLADDVQ NEAKELSRIR DYLFN
101: ARGQLADDVQ NEAKELSRIR DYLFN
001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG
Arabidopsis Description
CLPR2ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.