Factsheet for PGSC0003DMT400010010

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007157
PGSC0003DMT400010090
PGSC0003DMT400013567
PGSC0003DMT400055547
PGSC0003DMT400065220
PGSC0003DMT400067452
PGSC0003DMT400078756
PGSC0003DMT400079259

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12060.1	PGSC0003DMT400007157	AT1G02560.1	14593120
AT4G12060.1	PGSC0003DMT400010090	AT1G12410.1	14593120
AT4G12060.1	PGSC0003DMT400065220	AT1G49970.1	14593120
AT4G12060.1	PGSC0003DMT400078756	AT1G66670.1	14593120
AT4G12060.1	PGSC0003DMT400067452	AT4G17040.1	14593120
AT4G12060.1	PGSC0003DMT400079259	AT5G45390.1	14593120
AT4G12060.1	PGSC0003DMT400013567	ATCG00670.1	14593120
AT4G12060.1	PGSC0003DMT400055547	ATCG00670.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g079660.2.1	Tomato	plastid	69.18	92.05
GSMUA_Achr11P...	Banana	cytosol	26.1	59.71
CDX94486	Canola	plastid	36.79	47.95
GSMUA_Achr5P18820_001	Banana	plastid	33.33	47.11
KRH77428	Soybean	endoplasmic reticulum, golgi	37.42	46.67
AT4G12060.1	Thale cress	plastid	34.91	46.06
CDX86723	Canola	plastid	35.22	45.9
Bra029436.1-P	Field mustard	plastid	34.91	45.49
Os03t0247000-01	Rice	plastid	31.45	43.1
OQU92918	Sorghum	plastid	30.82	42.61
TraesCS4B01G224500.1	Wheat	plastid	30.19	41.92
TraesCS4D01G225100.1	Wheat	plastid	30.19	41.92
TraesCS4A01G079500.1	Wheat	plastid	29.87	41.48
HORVU4Hr1G063150.3	Barley	plastid	30.19	38.1
Zm00001d028414_P002	Maize	plastid	29.25	37.96
Zm00001d047920_P003	Maize	plastid	29.87	32.99

Protein Annotations

Gene3D:1.10.1780.10	EntrezGene:102603355	MapMan:19.4.2.9.3	InterPro:Clp_N	InterPro:Clp_N_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570
GO:GO:0009941	GO:GO:0019538	GO:GO:0043424	InterPro:IPR036628	UniProt:M0ZXB6	PFAM:PF02861
EnsemblPlantsGene:PGSC0003DMG400003923	PGSC:PGSC0003DMG400003923	EnsemblPlants:PGSC0003DMT400010010	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124	SUPFAM:SSF81923
UniParc:UPI00029518B1	SEG:seg	:	:	:	:

Description

ATP-dependent clp protease [Source:PGSC_GENE;Acc:PGSC0003DMG400003923]

Coordinates

chr8:-:53367968..53371992

Molecular Weight (calculated)

34974.4 Da

IEP (calculated)

5.549

GRAVY (calculated)

-0.382

Length

318 amino acids

Sequence
(BLAST)

001: MAVQALSTVA ATSKSINQLN CRGPDSFLWT KNPLEPKNLQ CQWLGTPIKF SLQSKNFKQF LSKQCTIRAD VSFVLPRGKP EPTVPIEKIP KWSAKAVKSF
101: TMAELEARKL KYATTGTEAL ILGMLIEGTN FASKYLRANS ITLLKFREET IKIVGKGDFY YCSPKEPPLT EDAQKALDWA FDEKLKSGVD YGCQKEQIAN
201: LTHNAEQLSL RNSDPNNGAS EIKSETVERA AIPNLGSSDI KAVAADASAF SFGDDEGYEC ERVGPFSDSR EITTTHVLLG VWSQQGSPGY KVLAALGFND
301: EKAKELENVI SDPGFVDD

Best Arabidopsis Sequence Match ( AT4G12060.1 )
(BLAST)

001: MAAHSSCNFA LTNPIISQID SFSKKKLSVP LYFFSTRKAL TNPWLGVVDS SLSLTSPVSA LQTNRPRRIH KSAISSLPTA NPDLVVSDAK KPKWSWRAIK
101: SFAMGELEAR KLKYPNTGTE ALLMGILIEG TSFTSKFLRA NKIMLYKVRE ETVKLLGKAD MYFFSPEHPP LTEDAQRALD SALDQNLKAG GIGEVMPAHI
201: LLGIWSEVES PGHKILATLG FTDEKSKELE SFASESGFLD E

Arabidopsis Description

CLPT2ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GW78]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.