Factsheet for Zm00001d047920_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GRMZM5G804708_P01
Zm00001d009339_P001
Zm00001d028414_P002
Zm00001d028895_P001
Zm00001d030149_P001
Zm00001d039167_P001
Zm00001d040322_P002
Zm00001d045430_P002
Zm00001d047634_P002
Zm00001d047920_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12060.1	Zm00001d028895_P001	AT1G02560.1	14593120
AT4G12060.1	Zm00001d047634_P002	AT1G02560.1	14593120
AT4G12060.1	Zm00001d045430_P002	AT1G12410.1	14593120
AT4G12060.1	Zm00001d039167_P001	AT1G49970.1	14593120
AT4G12060.1	Zm00001d009339_P001	AT1G66670.1	14593120
AT4G12060.1	Zm00001d040322_P002	AT4G17040.1	14593120
AT4G12060.1	Zm00001d028414_P002	AT4G25370.1	14593120
AT4G12060.1	Zm00001d047920_P003	AT4G25370.1	14593120
AT4G12060.1	Zm00001d030149_P001	AT5G45390.1	14593120
AT4G12060.1	GRMZM5G804708_P01	ATCG00670.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92918	Sorghum	plastid	69.1	86.52
Zm00001d028414_P002	Maize	plastid	65.62	77.14
Os03t0247000-01	Rice	plastid	61.11	75.86
TraesCS4D01G225100.1	Wheat	plastid	59.38	74.67
TraesCS4B01G224500.1	Wheat	plastid	59.03	74.24
TraesCS4A01G079500.1	Wheat	plastid	58.68	73.8
GSMUA_Achr11P...	Banana	cytosol	35.42	73.38
HORVU4Hr1G063150.3	Barley	plastid	60.76	69.44
GSMUA_Achr5P18820_001	Banana	plastid	40.97	52.44
VIT_16s0022g01840.t01	Wine grape	plastid	39.24	49.56
Solyc03g007110.2.1	Tomato	plastid	37.85	46.38
CDX92700	Canola	plastid	35.76	44.4
Bra019170.1-P	Field mustard	plastid	36.11	44.26
CDY49708	Canola	plastid	36.11	44.26
AT4G25370.1	Thale cress	plastid	36.46	44.12
KRH09223	Soybean	plastid	38.54	44.05
KRH38715	Soybean	plastid	29.51	43.37
KRH38717	Soybean	nucleus, plastid	37.85	43.25
CDX94486	Canola	plastid	36.11	42.62
Bra029436.1-P	Field mustard	plastid	35.42	41.8
KRH09224	Soybean	nucleus, plastid	37.5	41.54
CDX86723	Canola	plastid	35.07	41.39
AT4G12060.1	Thale cress	plastid	34.38	41.08
CDX94453	Canola	plastid	18.06	40.0
Solyc08g079660.2.1	Tomato	plastid	32.99	39.75
KRH77428	Soybean	endoplasmic reticulum, golgi	34.03	38.43
CDY57285	Canola	plastid	24.65	34.8
PGSC0003DMT400010010	Potato	plastid	32.99	29.87

Protein Annotations

Gene3D:1.10.1780.10	EntrezGene:100274511	MapMan:19.4.2.9.3	UniProt:A0A1D6PEU1	ProteinID:AQL08050.1	ProteinID:AQL08054.1
InterPro:Clp_N	InterPro:Clp_N_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016787
GO:GO:0019538	InterPro:IPR036628	PFAM:PF02861	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124	SUPFAM:SSF81923
UniParc:UPI0008437367	EnsemblPlantsGene:Zm00001d047920	EnsemblPlants:Zm00001d047920_P003	EnsemblPlants:Zm00001d047920_T003	:	:

Description

ATP-dependent Clp protease ATP-binding subunit CLPT1 chloroplastic

Coordinates

chr9:+:145447920..145457166

Molecular Weight (calculated)

31239.8 Da

IEP (calculated)

9.988

GRAVY (calculated)

-0.089

Length

288 amino acids

Sequence
(BLAST)

001: MPCWRSSHVT GVHFLVDAIL AKAHLRGANI PNFSIKHALL PCIYPLSKPE TPERVRKQLP AMATADRVAA TFLSSFPTHH PRPFSSVSLV TNPVLPVSLR
101: AAVTGGPRLA SRLRVHRVGA AVAQLPTTWS SRAVRSFAMA ELEARKMRYP TTGTEGLLMG ILVEGTSGAA KLLRANGTTL LKVREEAANV LGKSEMFYFS
201: PMHPPLTEAA QRALDWAVNE KLKSGEDGEV TANHLLLGIW SDKESAGHKI LYSLGFDDEK ASLLAKTAGE EAAMSLREQG EHLIYSST

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.