Factsheet for Os03t0247000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CAA33972
Os01t0271400-00
Os01t0507900-01
Os03t0247000-01
Os03t0308100-01
Os05t0592100-01
Os06t0136800-01
Os10t0580800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12060.1	Os03t0308100-01	AT1G02560.1	14593120
AT4G12060.1	Os06t0136800-01	AT1G12410.1	14593120
AT4G12060.1	Os05t0592100-01	AT1G49970.1	14593120
AT4G12060.1	Os01t0507900-01	AT1G66670.1	14593120
AT4G12060.1	Os01t0271400-00	AT4G17040.1	14593120
AT4G12060.1	Os03t0247000-01	AT4G25370.1	14593120
AT4G12060.1	Os10t0580800-01	AT5G45390.1	14593120
AT4G12060.1	CAA33972	ATCG00670.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92918	Sorghum	plastid	83.19	83.91
TraesCS4D01G225100.1	Wheat	plastid	80.17	81.22
TraesCS4A01G079500.1	Wheat	plastid	79.31	80.35
TraesCS4B01G224500.1	Wheat	plastid	78.45	79.48
Zm00001d028414_P002	Maize	plastid	82.33	77.96
HORVU4Hr1G063150.3	Barley	plastid	80.17	73.81
GSMUA_Achr11P...	Banana	cytosol	43.1	71.94
Zm00001d047920_P003	Maize	plastid	75.86	61.11
GSMUA_Achr5P18820_001	Banana	plastid	52.59	54.22
VIT_16s0022g01840.t01	Wine grape	plastid	51.72	52.63
KRH09223	Soybean	plastid	50.0	46.03
Solyc03g007110.2.1	Tomato	plastid	46.55	45.96
Bra029436.1-P	Field mustard	plastid	47.84	45.49
KRH38715	Soybean	plastid	38.36	45.41
CDX92700	Canola	plastid	45.26	45.26
CDY49708	Canola	plastid	45.69	45.11
Bra019170.1-P	Field mustard	plastid	45.69	45.11
CDX86723	Canola	plastid	47.41	45.08
KRH38717	Soybean	nucleus, plastid	48.28	44.44
AT4G12060.1	Thale cress	plastid	46.12	44.4
CDX94486	Canola	plastid	46.12	43.85
KRH09224	Soybean	nucleus, plastid	48.71	43.46
AT4G25370.1	Thale cress	plastid	43.97	42.86
Solyc08g079660.2.1	Tomato	plastid	42.67	41.42
KRH77428	Soybean	endoplasmic reticulum, golgi	43.53	39.61
CDX94453	Canola	plastid	21.98	39.23
CDY57285	Canola	plastid	30.6	34.8
PGSC0003DMT400010010	Potato	plastid	43.1	31.45

Protein Annotations

Gene3D:1.10.1780.10	MapMan:19.4.2.9.3	EntrezGene:4332243	ProteinID:ABF94952.1	EMBL:AK100847	ProteinID:BAF11461.1
ProteinID:BAS83253.1	InterPro:Clp_N	InterPro:Clp_N_dom_sf	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
InterPro:IPR036628	EnsemblPlantsGene:Os03g0247000	EnsemblPlants:Os03t0247000-01	PFAM:PF02861	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124
UniProt:Q10P51	SUPFAM:SSF81923	UniParc:UPI0000DB4181	RefSeq:XP_015633036.1	SEG:seg	:

Description

CHLOROPLAST PROTEASE TClp, N-terminal domain containing protein. (Os03t0247000-01)

Coordinates

chr3:-:7773866..7779865

Molecular Weight (calculated)

24329.0 Da

IEP (calculated)

9.902

GRAVY (calculated)

-0.104

Length

232 amino acids

Sequence
(BLAST)

001: MATAAQAAAA AFLSFLSSSP PHHTAPSSSV SFLAARVLPA SLRAAAAGSP TSASRSRGRG VAAVVAQLPT ANPEVASGEK KIRWSSRAVR SFAMAELEAR
101: KMRYPTTGTE GLLMGILVEG TSDAAKLLRA NGITLLKVRE EAANVLGKSE MFYFSPMHPP LTEAAQRALD WAINEKLKSG EDGEVTANHL LLGIWSDKES
201: AGHKVLASLG FDDERANSLA KTAGEEAAMS PR

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.