CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49708	Canola	plastid	92.24	91.06
AT4G25370.1	Thale cress	plastid	80.17	78.15
CDY57285	Canola	plastid	67.67	76.96
GSMUA_Achr11P...	Banana	cytosol	40.52	67.63
KRH38715	Soybean	plastid	48.28	57.14
VIT_16s0022g01840.t01	Wine grape	plastid	55.6	56.58
CDX94453	Canola	plastid	31.03	55.38
KRH38717	Soybean	nucleus, plastid	57.33	52.78
GSMUA_Achr5P18820_001	Banana	plastid	50.0	51.56
KRH09224	Soybean	nucleus, plastid	57.33	51.15
Solyc03g007110.2.1	Tomato	plastid	49.57	48.94
KRH09223	Soybean	plastid	53.02	48.81
OQU92918	Sorghum	plastid	46.98	47.39
Os03t0247000-01	Rice	plastid	45.26	45.26
TraesCS4B01G224500.1	Wheat	plastid	43.53	44.1
TraesCS4D01G225100.1	Wheat	plastid	43.53	44.1
TraesCS4A01G079500.1	Wheat	plastid	42.67	43.23
Zm00001d028414_P002	Maize	plastid	43.97	41.63
CDX86723	Canola	plastid	43.53	41.39
CDX94486	Canola	plastid	43.53	41.39
HORVU4Hr1G063150.3	Barley	plastid	43.1	39.68
Zm00001d047920_P003	Maize	plastid	44.4	35.76

Protein Annotations

EnsemblPlants:CDX92700	EnsemblPlantsGene:GSBRNA2T00154513001	Gene3D:1.10.1780.10	GO:A0A078DTM6	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:Clp_N	InterPro:Clp_N_dom_sf	InterPro:IPR036628	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124
PFAM:PF02861	ProteinID:CDX92700	ProteinID:CDX92700.1	SEG:seg	SUPFAM:SSF81923	UniParc:UPI0004EEE49B
MapMan:19.4.2.9.3	:	:	:	:	:

Description

BnaC07g39580D

Coordinates

chrLK031873:+:368519..370367

Molecular Weight (calculated)

25402.6 Da

IEP (calculated)

10.033

GRAVY (calculated)

-0.242

Length

232 amino acids

Sequence
(BLAST)

001: MASSYTLSFI PVTVSNSNPR IFVSIPPPSS LLGKKLLVTQ TSRRCFVSKK HRCLTSASTV FSVPTAQPEN GSSSDKIPKW SARAIKSLAM GELEARKLKY
101: PTTGTEAILM GILVEGTSTA AKFLRGNGIT LFKVRDEIIK LLGKSDMYFF SPEHPPLTEP ARKAVDWAID EKKKSGVDGE LTTAYLLLGV WSQKDSAGRQ
201: ILEALGFNED KAKQVAEAMN EDVDLSFKKQ SQ

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.