Factsheet for GSMUA_Achr11P00980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P08260_001
GSMUA_Achr2P08390_001
GSMUA_Achr4P13550_001
GSMUA_Achr5P18820_001
GSMUA_Achr6P01290_001
GSMUA_Achr8P22320_001
GSMUA_Achr9P24480_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12060.1	GSMUA_Achr8P22320_001	AT1G02560.1	14593120
AT4G12060.1	GSMUA_Achr1P08260_001	AT1G12410.1	14593120
AT4G12060.1	GSMUA_Achr2P08390_001	AT1G49970.1	14593120
AT4G12060.1	GSMUA_Achr4P13550_001	AT1G66670.1	14593120
AT4G12060.1	GSMUA_Achr11P...	AT4G17040.1	14593120
AT4G12060.1	GSMUA_Achr9P24480_001	AT4G17040.1	14593120
AT4G12060.1	GSMUA_Achr11P...	AT4G25370.1	14593120
AT4G12060.1	GSMUA_Achr5P18820_001	AT4G25370.1	14593120
AT4G12060.1	GSMUA_Achr6P01290_001	AT5G45390.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P18820_001	Banana	plastid	87.05	53.78
VIT_16s0022g01840.t01	Wine grape	plastid	80.58	49.12
Solyc03g007110.2.1	Tomato	plastid	76.26	45.11
OQU92918	Sorghum	plastid	72.66	43.91
Os03t0247000-01	Rice	plastid	71.94	43.1
KRH38717	Soybean	nucleus, plastid	77.7	42.86
KRH09223	Soybean	plastid	76.26	42.06
TraesCS4D01G225100.1	Wheat	plastid	69.06	41.92
TraesCS4B01G224500.1	Wheat	plastid	69.06	41.92
Zm00001d028414_P002	Maize	plastid	73.38	41.63
KRH09224	Soybean	nucleus, plastid	77.7	41.54
TraesCS4A01G079500.1	Wheat	plastid	68.35	41.48
KRH38715	Soybean	plastid	58.27	41.33
CDX92700	Canola	plastid	67.63	40.52
AT4G12060.1	Thale cress	plastid	69.78	40.25
CDY49708	Canola	plastid	67.63	40.0
Bra019170.1-P	Field mustard	plastid	67.63	40.0
AT4G25370.1	Thale cress	plastid	68.35	39.92
Bra029436.1-P	Field mustard	plastid	66.91	38.11
HORVU4Hr1G063150.3	Barley	plastid	69.06	38.1
CDX94486	Canola	plastid	66.19	37.7
CDX86723	Canola	plastid	66.19	37.7
CDX94453	Canola	plastid	35.25	37.69
KRH77428	Soybean	endoplasmic reticulum, golgi	68.35	37.25
Zm00001d047920_P003	Maize	plastid	73.38	35.42
Solyc08g079660.2.1	Tomato	plastid	58.27	33.89
CDY57285	Canola	plastid	41.73	28.43
PGSC0003DMT400010010	Potato	plastid	59.71	26.1

Protein Annotations

EnsemblPlants:GSMUA_Achr11P00980_001	EnsemblPlants:GSMUA_Achr11T00980_001	EnsemblPlantsGene:GSMUA_Achr11G00980_001	Gene3D:1.10.1780.10	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:Clp_N	InterPro:Clp_N_dom_sf	InterPro:IPR036628	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124
PFAM:PF02861	SUPFAM:SSF81923	UniParc:UPI000296E174	UniProt:M0RNC9	MapMan:19.4.2.9.3	:

Description

Clp protease-related protein At4g12060, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G00980_001]

Coordinates

chr11:+:659871..664081

Molecular Weight (calculated)

15441.6 Da

IEP (calculated)

5.331

GRAVY (calculated)

-0.357

Length

139 amino acids

Sequence
(BLAST)

001: MAELEARKLK YPKTGTEALL MGILVEGTSE TAKFLRANGI TVFKLREETV KLLGKSDMYF FSPEHPPLTE PAQRALDWAV DEKLKSGEDG EITTAHLLLG
101: IWSEKESAGH KILASLGFDD EKASELAKSA DKDIVMKYR

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.