CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09223	Soybean	plastid	89.23	92.06
KRH38717	Soybean	nucleus, plastid	78.85	81.35
GSMUA_Achr11P...	Banana	cytosol	41.54	77.7
KRH38715	Soybean	plastid	57.69	76.53
VIT_16s0022g01840.t01	Wine grape	plastid	56.15	64.04
Bra019170.1-P	Field mustard	plastid	53.46	59.15
CDY49708	Canola	plastid	53.46	59.15
Solyc03g007110.2.1	Tomato	plastid	53.08	58.72
CDX92700	Canola	plastid	51.15	57.33
GSMUA_Achr5P18820_001	Banana	plastid	48.85	56.44
AT4G25370.1	Thale cress	plastid	50.0	54.62
CDY57285	Canola	plastid	38.46	49.02
Os03t0247000-01	Rice	plastid	43.46	48.71
CDX94453	Canola	plastid	23.85	47.69
OQU92918	Sorghum	plastid	41.92	47.39
KRH77428	Soybean	endoplasmic reticulum, golgi	46.15	47.06
TraesCS4B01G224500.1	Wheat	plastid	40.77	46.29
TraesCS4D01G225100.1	Wheat	plastid	40.77	46.29
TraesCS4A01G079500.1	Wheat	plastid	40.38	45.85
Zm00001d028414_P002	Maize	plastid	42.69	45.31
HORVU4Hr1G063150.3	Barley	plastid	40.38	41.67
Zm00001d047920_P003	Maize	plastid	41.54	37.5

Protein Annotations

EMBL:ACUP02010275	EnsemblPlants:KRH09224	EnsemblPlantsGene:GLYMA_16G204100	Gene3D:1.10.1780.10	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:Clp_N	InterPro:Clp_N_dom_sf	InterPro:IPR036628	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124
PFAM:PF02861	ProteinID:KRH09224	ProteinID:KRH09224.1	SEG:seg	SUPFAM:SSF81923	UniParc:UPI000233B06A
UniProt:K7MIQ9	MapMan:19.4.2.9.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:36513142..36517351

Molecular Weight (calculated)

28293.9 Da

IEP (calculated)

9.164

GRAVY (calculated)

-0.317

Length

260 amino acids

Sequence
(BLAST)

001: MKASTLPFCP THLPKTSHFS LHLLPMASIP TLSSPLPTIS AHSSPHSNPN NHCTLSPTSL FGTRITLLRA TSSSRSLPNT NCRATSATVS FSLPTPKPLS
101: DTPEKTPKWS ARAIKSYAMG ELEARKLKYP NTGTEALLMG ILVEGTSKAA KFLRANGITL FKVREETVEL LGKSDLYFFS PEHPPLTEPA QKALDWAIEE
201: KLKSGEGGEI NVTHLLLGIW SQKESAGQQI LDTLGFNDEK AKELAKTIDG DVDLSFKRQA

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.