CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09224	Soybean	nucleus, plastid	81.35	78.85
KRH38715	Soybean	plastid	61.11	78.57
GSMUA_Achr11P...	Banana	cytosol	42.86	77.7
KRH09223	Soybean	plastid	75.79	75.79
VIT_16s0022g01840.t01	Wine grape	plastid	57.14	63.16
CDX92700	Canola	plastid	52.78	57.33
Bra019170.1-P	Field mustard	plastid	53.17	57.02
CDY49708	Canola	plastid	53.17	57.02
GSMUA_Achr5P18820_001	Banana	plastid	50.0	56.0
Solyc03g007110.2.1	Tomato	plastid	51.98	55.74
AT4G25370.1	Thale cress	plastid	52.38	55.46
OQU92918	Sorghum	plastid	44.44	48.7
CDY57285	Canola	plastid	39.29	48.53
Os03t0247000-01	Rice	plastid	44.44	48.28
TraesCS4B01G224500.1	Wheat	plastid	42.46	46.72
TraesCS4D01G225100.1	Wheat	plastid	42.46	46.72
TraesCS4A01G079500.1	Wheat	plastid	42.06	46.29
KRH77428	Soybean	endoplasmic reticulum, golgi	46.83	46.27
Zm00001d028414_P002	Maize	plastid	43.65	44.9
CDX94453	Canola	plastid	23.02	44.62
HORVU4Hr1G063150.3	Barley	plastid	42.06	42.06
Zm00001d047920_P003	Maize	plastid	43.25	37.85

Protein Annotations

EMBL:ACUP02005866	EnsemblPlants:KRH38717	EnsemblPlantsGene:GLYMA_09G153300	EntrezGene:100802336	Gene3D:1.10.1780.10	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	InterPro:Clp_N	InterPro:Clp_N_dom_sf	InterPro:IPR036628	PANTHER:PTHR11638
PANTHER:PTHR11638:SF124	PFAM:PF02861	ProteinID:KRH38717	ProteinID:KRH38717.1	SEG:seg	SUPFAM:SSF81923
UniParc:UPI00023388DB	UniProt:I1L3K3	MapMan:19.4.2.9.3	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:37590857..37595141

Molecular Weight (calculated)

27380.9 Da

IEP (calculated)

9.617

GRAVY (calculated)

-0.292

Length

252 amino acids

Sequence
(BLAST)

001: MKASTLPLYP TPLPKTSLSA SHFSLHLLPM ASIPTLSLSN PNNHCTLPPT SLFGTRITLL RATSSSRSLP NTNCRATSAT VSFSLPTPKP LSDTPEKTPK
101: WSARAIKSYA MGELEARKLK YPNTGTEALL MGILVEGTSK AAKFSRANGI TLFKVREETV ELLGKSDLYF FSPEHPPLTE PAQKALDWAI EEKLKSGEGG
201: EINVTHLLLG IWSQKESAGQ QILATLGFND EKAKELSKSI DGDVDLSFKR QA

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.