Factsheet for Bra029436.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004177.1-P
Bra012683.1-P
Bra014229.1-P
Bra019170.1-P
Bra019764.1-P
Bra025079.1-P
Bra026972.1-P
Bra030504.1-P
Bra033332.1-P
Bra040108.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12060.1	Bra030504.1-P	AT1G02560.1	14593120
AT4G12060.1	Bra033332.1-P	AT1G02560.1	14593120
AT4G12060.1	Bra019764.1-P	AT1G12410.1	14593120
AT4G12060.1	Bra026972.1-P	AT1G12410.1	14593120
AT4G12060.1	Bra014229.1-P	AT1G49970.1	14593120
AT4G12060.1	Bra004177.1-P	AT1G66670.1	14593120
AT4G12060.1	Bra012683.1-P	AT4G17040.1	14593120
AT4G12060.1	Bra040108.1-P	AT4G17040.1	14593120
AT4G12060.1	Bra019170.1-P	AT4G25370.1	14593120
AT4G12060.1	Bra025079.1-P	AT5G45390.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86723	Canola	plastid	98.36	98.36
GSMUA_Achr11P...	Banana	cytosol	38.11	66.91
AT4G12060.1	Thale cress	plastid	65.16	65.98
GSMUA_Achr5P18820_001	Banana	plastid	47.54	51.56
KRH77428	Soybean	endoplasmic reticulum, golgi	50.41	48.24
Os03t0247000-01	Rice	plastid	45.49	47.84
OQU92918	Sorghum	plastid	44.67	47.39
TraesCS4A01G079500.1	Wheat	plastid	42.21	44.98
Solyc08g079660.2.1	Tomato	plastid	43.85	44.77
TraesCS4D01G225100.1	Wheat	plastid	41.8	44.54
TraesCS4B01G224500.1	Wheat	plastid	41.39	44.1
Zm00001d028414_P002	Maize	plastid	44.26	44.08
Bra019170.1-P	Field mustard	plastid	42.21	43.83
HORVU4Hr1G063150.3	Barley	plastid	41.8	40.48
Zm00001d047920_P003	Maize	plastid	41.8	35.42
PGSC0003DMT400010010	Potato	plastid	45.49	34.91

Protein Annotations

Gene3D:1.10.1780.10	MapMan:19.4.2.9.3	EnsemblPlantsGene:Bra029436	EnsemblPlants:Bra029436.1	EnsemblPlants:Bra029436.1-P	InterPro:Clp_N
InterPro:Clp_N_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009532
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0019538	GO:GO:0043424	InterPro:IPR036628
UniProt:M4EKW9	PFAM:PF02861	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124	SUPFAM:SSF81923	UniParc:UPI00025427EA

Description

AT4G12060 (E=6e-097) | Clp amino terminal domain-containing protein

Coordinates

chrA09:+:18076856..18077991

Molecular Weight (calculated)

26701.8 Da

IEP (calculated)

9.571

GRAVY (calculated)

-0.257

Length

244 amino acids

Sequence
(BLAST)

001: MASQSFTLAN LRISQIGSFY SQNPSSPIHF FSTRNPVKSL NLTNPWMAGD SSLSLDYSAS VLRTNSTTRR KIPIAVVASL PTANPESAVS DAKKPKWSWR
101: GIKSFAMGEL EARKLKYPNT GTESLLMGIL IEGTSFTSKF LRAHKITLYK VREETIKLLG KADLYSFSPE HPPLTHDAQR ALDSAVNQNL KAGGAGEIMP
201: AHILLGVWSE VESPGHKILA TLGFTDEKAK ELESFASESG FLDE

Best Arabidopsis Sequence Match ( AT4G12060.1 )
(BLAST)

001: MAAHSSCNFA LTNPIISQID SFSKKKLSVP LYFFSTRKAL TNPWLGVVDS SLSLTSPVSA LQTNRPRRIH KSAISSLPTA NPDLVVSDAK KPKWSWRAIK
101: SFAMGELEAR KLKYPNTGTE ALLMGILIEG TSFTSKFLRA NKIMLYKVRE ETVKLLGKAD MYFFSPEHPP LTEDAQRALD SALDQNLKAG GIGEVMPAHI
201: LLGIWSEVES PGHKILATLG FTDEKSKELE SFASESGFLD E

Arabidopsis Description

CLPT2ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GW78]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.