Factsheet for VIT_12s0057g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid

Predictor Summary:

plastid 2
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2648g00010.t01	Wine grape	mitochondrion, peroxisome, plastid	32.87	82.17
VIT_00s2376g00010.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	28.52	77.0
KRH25488	Soybean	peroxisome	54.43	76.53
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	66.61	76.14
Solyc07g054670.2.1	Tomato	unclear	75.83	75.83
GSMUA_Achr3P22940_001	Banana	mitochondrion	70.61	70.12
GSMUA_Achr4P33660_001	Banana	mitochondrion	69.57	69.08
CDY38082	Canola	mitochondrion	69.04	69.04
TraesCS7D01G303500.1	Wheat	golgi	68.87	68.75
TraesCS7B01G206900.1	Wheat	mitochondrion	68.87	68.75
CDX85484	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	68.7	68.7
Bra023586.1-P	Field mustard	mitochondrion	67.3	68.62
TraesCS7A01G306600.1	Wheat	mitochondrion	68.7	68.58
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	68.52	68.28
Os05t0331200-01	Rice	mitochondrion	68.0	68.0
Bra006374.1-P	Field mustard	plastid	67.83	67.94
CDX78714	Canola	plastid	67.65	67.77
CDX70722	Canola	plastid	67.48	67.71
EES01568	Sorghum	mitochondrion	68.0	67.65
TraesCS3B01G350200.1	Wheat	mitochondrion	66.96	67.54
Zm00001d012615_P001	Maize	mitochondrion	67.83	67.47
AT2G20800.1	Thale cress	mitochondrion	68.17	67.35
EES14522	Sorghum	mitochondrion	68.0	67.3
TraesCS3A01G316500.1	Wheat	mitochondrion	66.96	67.19
TraesCS3D01G314700.1	Wheat	mitochondrion	66.96	67.19
Zm00001d043266_P002	Maize	mitochondrion	67.3	66.95
Zm00001d049597_P001	Maize	mitochondrion	67.13	65.2
Os08t0141400-01	Rice	mitochondrion	39.83	64.15
GSMUA_Achr10P...	Banana	mitochondrion	68.35	40.18
VIT_19s0027g01030.t01	Wine grape	cytosol	19.13	37.16
VIT_06s0004g06760.t01	Wine grape	plastid	31.13	35.87
VIT_00s0301g00090.t01	Wine grape	mitochondrion	31.48	33.15
Zm00001d004457_P001	Maize	mitochondrion	8.0	28.57

Protein Annotations

EntrezGene:100249308	wikigene:100249308	MapMan:2.4.2.1.2	Gene3D:3.50.50.100	EMBL:AM473606	ProteinID:CAN59740
ProteinID:CAN59740.1	ProteinID:CBI28383	ProteinID:CBI28383.3	UniProt:D7TD10	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EMBL:FN595759	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:IPR002048	InterPro:IPR036188	EntrezGene:LOC100249308	wikigene:LOC100249308	PFAM:PF07992	PRINTS:PR00368
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	SUPFAM:SSF47473	SUPFAM:SSF51905
UniParc:UPI0001BE2F11	ArrayExpress:VIT_12s0057g00250	EnsemblPlantsGene:VIT_12s0057g00250	EnsemblPlants:VIT_12s0057g00250.t01	RefSeq:XP_002274523	RefSeq:XP_002274523.1

Description

No Description!

Coordinates

chr12:-:8892171..8897392

Molecular Weight (calculated)

64755.5 Da

IEP (calculated)

8.331

GRAVY (calculated)

-0.302

Length

575 amino acids

Sequence
(BLAST)

001: MRTFTIFERA FKAFRDNPSL SKLMVVCTKI IGGGLLAFAE TRPFSGSDSV PKKKVVVLGT GWAGTSFLKN LKSSTFEVQV VSPRNYFAFT PLLPSVTCGT
101: VEARSIVEPI RNIVRKKGIN IEFKEAECYK IDTDNNKVYC RSGQDTNLGG EEEFSVDYDY LVIAMGARSN TFNTPGVVEN CHFLKEVEDA QRIRRTVIDC
201: FERASLPNLS EEERKRILHF VVVGGGPTGV EFAAELHDFV LEDLAKLYPS VKNLAKITLL EAGDHILNMF DKRITAFAEE KFQRDGIHLK TGSMVIKVDD
301: KHISTKERST GEVSEIPFGM VVWSTGIGTR PVIMDFMNQI GQTNRRALAT DEWLRVEGCN NIYALGDCAT INQRKVMEDI SVIFSKADKN NSGTLNLKDF
401: QEVIDDICER YPQVGLYLKK RQMRNIADLL KSSQAEKQGT ELDIALFTSA LSEVDSQMKN LPATAQVAAQ QGQYLANCFN RMEECERNPE GPLRFRGTGR
501: HRFHPFRYKH LGQFAPLGGE QAAAQLPGDW VSIGQSTQWL WYSVYASKQV SWRTRALVVS DWGRRFIFGR DSSRI

Best Arabidopsis Sequence Match ( AT4G21490.1 )
(BLAST)

001: MRPFAYFERL SQAFHDYPSL SKILVVSTIS GGGLIVYSEA NPSYSNNGVE TKTRKRKVVL LGTGWAGASF LKTLNNSSYE VQVISPRNYF AFTPLLPSVT
101: CGTVEARSVV EPIRNIARKQ NVEMSFLEAE CFKIDPGSKK VYCRSKQGVN SKGKKEFDVD YDYLVIATGA QSNTFNIPGV EENCHFLKEV EDAQRIRSTV
201: IDSFEKASLP GLNEQERKRM LHFVVVGGGP TGVEFASELH DFVNEDLVKL YPKAKNLVQI TLLEAADHIL TMFDKRITEF AEEKFTRDGI DVKLGSMVVK
301: VNDKEISAKT KAGEVSTIPY GMIVWSTGIG TRPVIKDFMK QIGQGNRRAL ATDEWLRVEG CDNIYALGDC ATINQRKVME DIAAIFKKAD KENSGTLTMK
401: EFHEVMSDIC DRYPQVELYL KSKGMHGITD LLKQAQAENG SNKSVELDIE ELKSALCQVD SQVKLLPATG QVAAQQGTYL AKCFDRMEVC EKNPEGPIRI
501: RGEGRHRFRP FRYRHLGQFA PLGGEQTAAQ LPGDWVSIGH SSQWLWYSVY ASKQVSWRTR VLVVSDWMRR FIFGRDSSRI

Arabidopsis Description

NDB3External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JJJ3]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.