Factsheet for VIT_12s0057g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2648g00010.t01	Wine grape	mitochondrion, peroxisome, plastid	30.85	77.39
KRH25490	Soybean	mitochondrion	74.18	74.69
Solyc10g008630.2.1	Tomato	mitochondrion	74.35	74.35
VIT_00s2376g00010.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	27.21	73.71
PGSC0003DMT400055796	Potato	mitochondrion	73.31	73.31
Solyc07g054640.1.1	Tomato	mitochondrion	72.27	72.52
PGSC0003DMT400047210	Potato	cytosol	38.65	72.4
Bra024217.1-P	Field mustard	mitochondrion	70.02	70.88
CDY29891	Canola	mitochondrion	70.02	70.88
CDY58724	Canola	mitochondrion	69.67	70.53
AT4G28220.1	Thale cress	mitochondrion	68.8	69.53
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	68.28	68.52
KRH26903	Soybean	mitochondrion	23.57	57.63
KRH56037	Soybean	extracellular, plasma membrane	32.24	55.19
VIT_19s0027g01030.t01	Wine grape	cytosol	17.85	34.8
VIT_06s0004g06760.t01	Wine grape	plastid	29.29	33.87
VIT_00s0301g00090.t01	Wine grape	mitochondrion	29.98	31.68

Protein Annotations

EntrezGene:100254643	wikigene:100254643	MapMan:2.4.2.1.2	Gene3D:3.50.50.100	EMBL:AM473606	ProteinID:CAN59739
ProteinID:CAN59739.1	ProteinID:CBI28384	ProteinID:CBI28384.3	UniProt:D7TD11	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EMBL:FN595759	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:IPR002048	InterPro:IPR036188	EntrezGene:LOC100254643	wikigene:LOC100254643	PFAM:PF07992	PRINTS:PR00368
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	SMART:SM00054	SUPFAM:SSF47473
SUPFAM:SSF51905	TIGR:TC62811	UniParc:UPI00015CAD6C	ArrayExpress:VIT_12s0057g00260	EnsemblPlantsGene:VIT_12s0057g00260	EnsemblPlants:VIT_12s0057g00260.t01
unigene:Vvi.6673	RefSeq:XP_002274469	RefSeq:XP_002274469.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:8897888..8904115

Molecular Weight (calculated)

64918.6 Da

IEP (calculated)

7.899

GRAVY (calculated)

-0.262

Length

577 amino acids

Sequence
(BLAST)

001: MTIFSFFSGA SRALGSSSKL LVILSISSGG LVAYSESQTD AGAQSAEIKQ KEPQKKRVVV LGTGWAGTSF LKDLDISSYD VKVVSPRNYF AFTPLLPSVT
101: CGTVEARSIV EPIRNIIKKR NGEIQYWEAE CVKIDAANKK IRCRSVIDNS LVGNEEFLVD YDYLVIAMGA QVNTFNTPGV NEHCHFLKEI EDAQKIRRSV
201: IDCFERAVLP DLTDEERRRN LHFVIVGGGP TGVEFAAELH DFILEDLVKL YPMVKDLVKI TVIQSGDHIL NMFDERISSF AERKFGRDGI EVQTGCRVTG
301: VSDKAMTVKV KSKGEICSVP YGMVVWSTGI VTRPVLRDFM DQIGQNKRHV LTTNEWLRVE GCDGVYALGD CAAVAQRRVM EDISTIFKTA DKDNSGTLTV
401: KEFQDVIDDI LVRYPQVELY LKNKHLNDVK DLLKDPQGHE RKEVDIEGFK SALRHVDSQM KSLPATAQVA AQQGAYLSSC FSRRQQCQET PEGPLRFRDS
501: GRHHFRPFRY KHLGQFAPLG GEQAAAELPG DWVSIGHSTQ WLWYSVYASK QVSWRTRFLV VSDWTRRFIF GRDSSRI

Best Arabidopsis Sequence Match ( AT4G28220.1 )
(BLAST)

001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

Arabidopsis Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q1JPL4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.