Factsheet for VIT_19s0027g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 4
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g06760.t01	Wine grape	plastid	91.55	54.31
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	69.59	50.74
HORVU2Hr1G022740.3	Barley	extracellular	23.31	50.37
Os01t0830100-01	Rice	mitochondrion	75.0	48.68
KRH17048	Soybean	mitochondrion	78.04	47.63
KRH72693	Soybean	mitochondrion	77.7	47.42
CDY70466	Canola	mitochondrion, peroxisome	54.73	46.29
PGSC0003DMT400010678	Potato	mitochondrion, peroxisome, plastid	75.34	45.05
Solyc06g007160.2.1	Tomato	plastid	75.34	45.05
CDY15606	Canola	plastid	75.34	44.16
CDX86494	Canola	mitochondrion, peroxisome	75.34	44.07
Bra022768.1-P	Field mustard	mitochondrion	75.0	44.05
CDX84870	Canola	mitochondrion	75.0	44.05
Bra030676.1-P	Field mustard	plastid	75.0	43.96
KRG98274	Soybean	mitochondrion	75.0	43.87
AT2G29990.1	Thale cress	mitochondrion	75.0	43.7
KRH30292	Soybean	mitochondrion	75.0	43.61
EES01700	Sorghum	mitochondrion	73.99	43.54
AT1G07180.1	Thale cress	mitochondrion	75.0	43.53
TraesCS3A01G349900.1	Wheat	mitochondrion	73.65	43.51
CDY10256	Canola	mitochondrion	74.66	43.42
Bra015560.1-P	Field mustard	mitochondrion	74.66	43.42
TraesCS3D01G343900.1	Wheat	mitochondrion	73.31	43.31
TraesCS3B01G382500.1	Wheat	mitochondrion	73.31	43.31
CDY06685	Canola	mitochondrion	74.32	43.22
Zm00001d012464_P001	Maize	mitochondrion	73.99	41.71
HORVU7Hr1G076330.1	Barley	mitochondrion, peroxisome	39.19	41.58
HORVU3Hr1G087850.7	Barley	peroxisome	72.64	41.03
HORVU2Hr1G101830.2	Barley	extracellular	20.27	37.74
VIT_00s0301g00090.t01	Wine grape	mitochondrion	67.57	36.63
HORVU3Hr1G087950.4	Barley	endoplasmic reticulum, vacuole	19.59	35.8
HORVU7Hr1G040660.4	Barley	cytosol	22.97	34.69
HORVU5Hr1G020920.4	Barley	extracellular	20.27	34.29
HORVU5Hr1G056500.3	Barley	extracellular	19.26	32.57
HORVU3Hr1G110990.1	Barley	peroxisome	7.77	24.47
VIT_00s2648g00010.t01	Wine grape	mitochondrion, peroxisome, plastid	18.58	23.91
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	37.16	19.13
VIT_00s2376g00010.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	13.51	18.78
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	34.8	17.85

Protein Annotations

ArrayExpress:VIT_19s0027g01030	EMBL:FN595234	EnsemblPlants:VIT_19s0027g01030.t01	EnsemblPlantsGene:VIT_19s0027g01030	Gene3D:3.50.50.100	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	InterPro:IPR036188	PANTHER:PTHR43706	PANTHER:PTHR43706:SF14	PFAM:PF07992	ProteinID:CCB47219
ProteinID:CCB47219.1	SUPFAM:SSF51905	UniParc:UPI000210A975	UniProt:F6H4S8	MapMan:2.4.2.1.1	:

Description

No Description!

Coordinates

chr19:+:20535461..20537533

Molecular Weight (calculated)

32838.9 Da

IEP (calculated)

9.342

GRAVY (calculated)

-0.007

Length

296 amino acids

Sequence
(BLAST)

001: MKGLDTNIYD VVCVSPRNHM VFTHLLASTC VGTLEFRSVA EPIAQIQPLI SRETGSYFFL ANCNRVDLDN HVRLLHCVVV GGGPIGVEFS GELSDFIMRN
101: VHQRFAHVKN YIHVTLIEAN EILSSFDDRL QHYATRQLTK SGVRLVRGIV KDVKVDKIIL NNGTEVPYGL LVWSTRVGPS SFVKSIEVPK SPGGRIGIDE
201: WLRVPSAQDI FAIGDCSGFL ESTGKPVLPA LAQVAERQGK YIAKQLNRIG KAGGGYANKA RDKEFREPFI YKHLGSMTFL SRYKALVDLS VIGCFK

Best Arabidopsis Sequence Match ( AT1G07180.1 )
(BLAST)

001: MLWIKNLARI SQTTSSSVGN VFRNPESYTL SSRFCTALQK QQVTDTVQAK EDVVNALEPQ RYDGLAPTKE GEKPRVLVLG SGWAGCRVLK GIDTSIYDVV
101: CVSPRNHMVF TPLLASTCVG TLEFRSVAEP ISRIQPAISR EPGSYYFLAN CSKLDADNHE VHCETVTEGS STLKPWKFKI AYDKLVLACG AEASTFGING
201: VLENAIFLRE VHHAQEIRRK LLLNLMLSEV PGIGEDEKKR LLHCVVVGGG PTGVEFSGEL SDFIMKDVRQ RYSHVKDDIR VTLIEARDIL SSFDDRLRHY
301: AIKQLNKSGV KLVRGIVKEV KPQKLILDDG TEVPYGPLVW STGVGPSSFV RSLDFPKDPG GRIGIDEWMR VPSVQDVFAI GDCSGYLEST GKSTLPALAQ
401: VAEREGKYLA NLFNVMGKAG GGRANSAKEM ELGEPFVYKH LGSMATIGRY KALVDLRESK EGKGISMAGF LSWFIWRSAY LTRVVSWRNR FYVAINWLTT
501: FVFGRDISRI

Arabidopsis Description

NDA1Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GWA1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.