Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 3
- extracellular 2
- vacuole 3
- plasma membrane 2
- golgi 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G110990.1 | Barley | peroxisome | 54.32 | 93.62 |
| HORVU2Hr1G101830.2 | Barley | extracellular | 75.31 | 76.73 |
| HORVU2Hr1G022740.3 | Barley | extracellular | 63.58 | 75.18 |
| HORVU5Hr1G020920.4 | Barley | extracellular | 75.93 | 70.29 |
| HORVU5Hr1G056500.3 | Barley | extracellular | 74.69 | 69.14 |
| HORVU7Hr1G040660.4 | Barley | cytosol | 75.31 | 62.24 |
| HORVU7Hr1G076330.1 | Barley | mitochondrion, peroxisome | 78.4 | 45.52 |
| CDY70466 | Canola | mitochondrion, peroxisome | 65.43 | 30.29 |
| TraesCS3D01G343900.1 | Wheat | mitochondrion | 83.95 | 27.15 |
| TraesCS3B01G382500.1 | Wheat | mitochondrion | 83.95 | 27.15 |
| TraesCS3A01G349900.1 | Wheat | mitochondrion | 83.95 | 27.15 |
| HORVU3Hr1G087850.7 | Barley | peroxisome | 85.8 | 26.53 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 64.81 | 25.86 |
| EES01700 | Sorghum | mitochondrion | 74.69 | 24.06 |
| Zm00001d012464_P001 | Maize | mitochondrion | 75.31 | 23.24 |
| AT1G07180.1 | Thale cress | mitochondrion | 68.52 | 21.76 |
| PGSC0003DMT400010678 | Potato | mitochondrion, peroxisome, plastid | 66.05 | 21.62 |
| VIT_06s0004g06760.t01 | Wine grape | plastid | 66.05 | 21.44 |
| Bra022768.1-P | Field mustard | mitochondrion | 66.67 | 21.43 |
| CDX84870 | Canola | mitochondrion | 66.67 | 21.43 |
| Bra015560.1-P | Field mustard | mitochondrion | 67.28 | 21.41 |
| CDY06685 | Canola | mitochondrion | 67.28 | 21.41 |
| Solyc06g007160.2.1 | Tomato | plastid | 65.43 | 21.41 |
| CDY10256 | Canola | mitochondrion | 66.67 | 21.22 |
| AT2G29990.1 | Thale cress | mitochondrion | 65.43 | 20.87 |
| Bra030676.1-P | Field mustard | plastid | 64.81 | 20.79 |
| CDY15606 | Canola | plastid | 64.2 | 20.59 |
| CDX86494 | Canola | mitochondrion, peroxisome | 64.2 | 20.55 |
| VIT_19s0027g01030.t01 | Wine grape | cytosol | 35.8 | 19.59 |
| HORVU2Hr1G040130.1 | Barley | peroxisome | 58.64 | 19.04 |
| Os01t0830100-01 | Rice | mitochondrion | 49.38 | 17.54 |
| KRH17976 | Soybean | cytosol | 16.05 | 13.4 |
| HORVU7Hr1G101500.4 | Barley | endoplasmic reticulum | 27.78 | 7.68 |
| HORVU7Hr1G073050.3 | Barley | plastid | 28.4 | 7.5 |
| HORVU3Hr1G076920.2 | Barley | mitochondrion | 22.22 | 5.89 |
| HORVU4Hr1G058410.1 | Barley | nucleus | 3.09 | 1.47 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G087950.4 | EnsemblPlantsGene:HORVU3Hr1G087950 | Gene3D:3.50.50.100 | PANTHER:PTHR43706 | PANTHER:PTHR43706:SF14 | SEG:seg |
| SignalP:SignalP-noTM | UniParc:UPI000B4621BB | UniProt:A0A287M4R1 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr3H:-:623127915..623129142
Molecular Weight (calculated)
18115.3 Da
IEP (calculated)
9.483
GRAVY (calculated)
0.293
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MVCLYVLLEL VLHHSSSHCH FLSQLEEDVF AVGDCCGFLE STGKEVLLAL VQVVERQGLY LARLLNSVMK AGGGHANSQV EVDLGSKFVY KHLGSMATVG
101: RYKALVNLRQ SKGSKGISIA GFASWFIWRS AYLTRVVSWR NRLYMAINWL TTMIFGRDIG RI
101: RYKALVNLRQ SKGSKGISIA GFASWFIWRS AYLTRVVSWR NRLYMAINWL TTMIFGRDIG RI
001: MLWIKNLARI SQTTSSSVGN VFRNPESYTL SSRFCTALQK QQVTDTVQAK EDVVNALEPQ RYDGLAPTKE GEKPRVLVLG SGWAGCRVLK GIDTSIYDVV
101: CVSPRNHMVF TPLLASTCVG TLEFRSVAEP ISRIQPAISR EPGSYYFLAN CSKLDADNHE VHCETVTEGS STLKPWKFKI AYDKLVLACG AEASTFGING
201: VLENAIFLRE VHHAQEIRRK LLLNLMLSEV PGIGEDEKKR LLHCVVVGGG PTGVEFSGEL SDFIMKDVRQ RYSHVKDDIR VTLIEARDIL SSFDDRLRHY
301: AIKQLNKSGV KLVRGIVKEV KPQKLILDDG TEVPYGPLVW STGVGPSSFV RSLDFPKDPG GRIGIDEWMR VPSVQDVFAI GDCSGYLEST GKSTLPALAQ
401: VAEREGKYLA NLFNVMGKAG GGRANSAKEM ELGEPFVYKH LGSMATIGRY KALVDLRESK EGKGISMAGF LSWFIWRSAY LTRVVSWRNR FYVAINWLTT
501: FVFGRDISRI
101: CVSPRNHMVF TPLLASTCVG TLEFRSVAEP ISRIQPAISR EPGSYYFLAN CSKLDADNHE VHCETVTEGS STLKPWKFKI AYDKLVLACG AEASTFGING
201: VLENAIFLRE VHHAQEIRRK LLLNLMLSEV PGIGEDEKKR LLHCVVVGGG PTGVEFSGEL SDFIMKDVRQ RYSHVKDDIR VTLIEARDIL SSFDDRLRHY
301: AIKQLNKSGV KLVRGIVKEV KPQKLILDDG TEVPYGPLVW STGVGPSSFV RSLDFPKDPG GRIGIDEWMR VPSVQDVFAI GDCSGYLEST GKSTLPALAQ
401: VAEREGKYLA NLFNVMGKAG GGRANSAKEM ELGEPFVYKH LGSMATIGRY KALVDLRESK EGKGISMAGF LSWFIWRSAY LTRVVSWRNR FYVAINWLTT
501: FVFGRDISRI
Arabidopsis Description
NDA1Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GWA1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.