Factsheet for TraesCS3D01G343900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 26136264

msms PMID: 26136264 doi

S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma

College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G382500.1	Wheat	mitochondrion	98.8	98.8
TraesCS3A01G349900.1	Wheat	mitochondrion	97.8	97.8
HORVU3Hr1G110990.1	Barley	peroxisome	17.56	93.62
Os01t0830100-01	Rice	mitochondrion	79.24	87.06
HORVU3Hr1G087850.7	Barley	peroxisome	90.42	86.45
EES01700	Sorghum	mitochondrion	84.63	84.29
HORVU3Hr1G087950.4	Barley	endoplasmic reticulum, vacuole	27.15	83.95
HORVU2Hr1G022740.3	Barley	extracellular	22.16	81.02
Zm00001d012464_P001	Maize	mitochondrion	84.03	80.19
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	64.07	79.06
CDY70466	Canola	mitochondrion, peroxisome	53.89	77.14
HORVU2Hr1G101830.2	Barley	extracellular	24.35	76.73
VIT_19s0027g01030.t01	Wine grape	cytosol	43.31	73.31
HORVU7Hr1G076330.1	Barley	mitochondrion, peroxisome	40.72	73.12
HORVU5Hr1G020920.4	Barley	extracellular	24.75	70.86
PGSC0003DMT400010678	Potato	mitochondrion, peroxisome, plastid	69.86	70.71
HORVU7Hr1G040660.4	Barley	cytosol	27.54	70.41
CDX84870	Canola	mitochondrion	70.66	70.24
Bra022768.1-P	Field mustard	mitochondrion	70.66	70.24
VIT_06s0004g06760.t01	Wine grape	plastid	69.86	70.14
Solyc06g007160.2.1	Tomato	plastid	69.26	70.1
AT2G29990.1	Thale cress	mitochondrion	70.46	69.49
AT1G07180.1	Thale cress	mitochondrion	70.66	69.41
HORVU5Hr1G056500.3	Barley	extracellular	24.15	69.14
Bra015560.1-P	Field mustard	mitochondrion	69.86	68.76
CDY10256	Canola	mitochondrion	69.86	68.76
CDY06685	Canola	mitochondrion	69.66	68.57
Bra030676.1-P	Field mustard	plastid	68.46	67.92
CDY15606	Canola	plastid	68.26	67.72
CDX86494	Canola	mitochondrion, peroxisome	67.66	67.0
KRH17976	Soybean	cytosol	22.95	59.28
TraesCS2D01G212500.1	Wheat	plastid	64.27	57.5
TraesCS7D01G303500.1	Wheat	golgi	35.73	31.08
TraesCS3D01G314700.1	Wheat	mitochondrion	32.34	28.27
TraesCS7D01G438100.1	Wheat	peroxisome, plastid	34.53	27.9

Protein Annotations

EnsemblPlants:TraesCS3D01G343900.1	EnsemblPlantsGene:TraesCS3D01G343900	Gene3D:3.50.50.100	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:IPR036188
PANTHER:PTHR43706	PANTHER:PTHR43706:SF14	PFAM:PF07992	PRINTS:PR00368	SEG:seg	SUPFAM:SSF51905
MapMan:2.4.2.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:455875981..455879513

Molecular Weight (calculated)

54576.0 Da

IEP (calculated)

9.515

GRAVY (calculated)

0.029

Length

501 amino acids

Sequence
(BLAST)

001: MAASSLLRSL SRVSRRACAP AFYGRGPFSP LSTAAAAAAA DAGDAAVLRR GLAGLGPTAK GEKPRVVVLG TGWAGSRLMK DLDTTGYDVV CVSPRNHMVF
101: TPLLASTCVG TLEFRSVAEP LARIQPAVSR SPGSYFLLAR CTAVDPDAHT IDCETVTEGE KDTLKPWKFK VSYDKLVFGC GAEASTFGIR GVTEHATFLR
201: EVHDAQEIRR KLLLNLMLSD VPGISEGEKR RLLHCVVVGG GPTGVEFSGE LSDFIIRDVK ERYSHVKDYV HVTLIEANEI LSSFDVRLRQ YAINQLVKSG
301: VRLVRGIVKD VQPDKLILDN GEEVPYGLLV WSTGVGASSF VKSLPFPKSH GGRIGVDEWL RVPSVPDVFA VGDCCGFLES TGKEVLPALA QVAERQGLYL
401: ARLLNRVMKS GGGHANSQVE VDLGPKFVYK HLGSMATVGR YKALVDLRQS KDSKGISIAG FASWFIWRSA YLTRVVSWRN RLYVAINWLT TMIFGRDISR
501: I

Best Arabidopsis Sequence Match ( AT1G07180.1 )
(BLAST)

001: MLWIKNLARI SQTTSSSVGN VFRNPESYTL SSRFCTALQK QQVTDTVQAK EDVVNALEPQ RYDGLAPTKE GEKPRVLVLG SGWAGCRVLK GIDTSIYDVV
101: CVSPRNHMVF TPLLASTCVG TLEFRSVAEP ISRIQPAISR EPGSYYFLAN CSKLDADNHE VHCETVTEGS STLKPWKFKI AYDKLVLACG AEASTFGING
201: VLENAIFLRE VHHAQEIRRK LLLNLMLSEV PGIGEDEKKR LLHCVVVGGG PTGVEFSGEL SDFIMKDVRQ RYSHVKDDIR VTLIEARDIL SSFDDRLRHY
301: AIKQLNKSGV KLVRGIVKEV KPQKLILDDG TEVPYGPLVW STGVGPSSFV RSLDFPKDPG GRIGIDEWMR VPSVQDVFAI GDCSGYLEST GKSTLPALAQ
401: VAEREGKYLA NLFNVMGKAG GGRANSAKEM ELGEPFVYKH LGSMATIGRY KALVDLRESK EGKGISMAGF LSWFIWRSAY LTRVVSWRNR FYVAINWLTT
501: FVFGRDISRI

Arabidopsis Description

NDA1Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GWA1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.