Factsheet for Bra030676.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15606	Canola	plastid	99.6	99.6
CDX86494	Canola	mitochondrion, peroxisome	97.82	97.63
Bra015560.1-P	Field mustard	mitochondrion	90.89	90.18
AT1G07180.1	Thale cress	mitochondrion	90.89	90.0
Bra022768.1-P	Field mustard	mitochondrion	84.36	84.52
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	61.39	76.35
VIT_19s0027g01030.t01	Wine grape	cytosol	43.96	75.0
KRH17048	Soybean	mitochondrion	70.1	72.99
KRH72693	Soybean	mitochondrion	70.1	72.99
KRH30292	Soybean	mitochondrion	72.87	72.3
KRG98274	Soybean	mitochondrion	72.28	72.13
Solyc06g007160.2.1	Tomato	plastid	70.3	71.72
PGSC0003DMT400010678	Potato	mitochondrion, peroxisome, plastid	70.1	71.52
HORVU3Hr1G110990.1	Barley	peroxisome	13.07	70.21
VIT_06s0004g06760.t01	Wine grape	plastid	69.31	70.14
EES01700	Sorghum	mitochondrion	68.71	68.99
Os01t0830100-01	Rice	mitochondrion	62.18	68.86
TraesCS3D01G343900.1	Wheat	mitochondrion	67.92	68.46
TraesCS3B01G382500.1	Wheat	mitochondrion	67.92	68.46
TraesCS3A01G349900.1	Wheat	mitochondrion	67.72	68.26
Zm00001d012464_P001	Maize	mitochondrion	68.12	65.52
HORVU3Hr1G087950.4	Barley	endoplasmic reticulum, vacuole	20.79	64.81
HORVU3Hr1G087850.7	Barley	peroxisome	67.13	64.69
HORVU2Hr1G022740.3	Barley	extracellular	17.43	64.23
HORVU2Hr1G101830.2	Barley	extracellular	19.01	60.38
HORVU7Hr1G040660.4	Barley	cytosol	22.38	57.65
HORVU7Hr1G076330.1	Barley	mitochondrion, peroxisome	31.49	56.99
HORVU5Hr1G020920.4	Barley	extracellular	19.6	56.57
HORVU5Hr1G056500.3	Barley	extracellular	19.01	54.86
Bra023586.1-P	Field mustard	mitochondrion	34.06	30.5
Bra029549.1-P	Field mustard	mitochondrion	34.46	30.05
Bra024217.1-P	Field mustard	mitochondrion	33.66	29.82
Bra006374.1-P	Field mustard	plastid	33.66	29.62

Protein Annotations

EnsemblPlants:Bra030676.1	EnsemblPlants:Bra030676.1-P	EnsemblPlantsGene:Bra030676	Gene3D:3.50.50.100	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
InterPro:IPR036188	PANTHER:PTHR43706	PANTHER:PTHR43706:SF14	PFAM:PF07992	PRINTS:PR00368	SUPFAM:SSF51905
UniParc:UPI0002546F43	UniProt:M4EPF6	MapMan:2.4.2.1.1	:	:	:

Description

AT1G07180 (E=4e-265) ATNDI1, NDA1 | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1); NADH dehydrogenase

Coordinates

chrA08:-:20845485..20847879

Molecular Weight (calculated)

56029.8 Da

IEP (calculated)

9.154

GRAVY (calculated)

-0.099

Length

505 amino acids

Sequence
(BLAST)

001: MSWIKNLVKI SPTISSVGNL FRNHESCTLS SRFCTALQHQ QRQSETVQAA EVVQHRYEGL APTKEGEKPR LLVLGSGWAG CRLMKGIDTS IYDVVCVSPR
101: NHMVFTPLLA STCVGTLEFR SVAEPISRIQ PAISREPGSY YFLANCSRLD SQNHEVHCET VTDGLSTLKP WKFKIAYDKL VLACGAEAST FGINGVLENA
201: IFLREVHHAQ EIRRKLLLNL MLSEVPGLGG EEKKRLLHCV VVGGGPTGVE FSGELSDFIM KDVRQRYAHV KDDIRVTLIE ARDILSSFDD GLRQYAIKQL
301: NKSGVKLVRG IVKEVKPQRL ILDDGTEVPY GLLVWSTGVG PSSFVRSLDL PKDPGGRIGI DEWMRVPSVQ DVFAIGDCSG YLESTGKSTL PALAQVAERE
401: GKYLANLLNV MGKAGGGRAL SAKETELGEP FVYKHLGSMA TIGRYKALVD LRESKQGKGI SMGGFLSFFI WRSAYLTRVV SWRNRFYVFI NWITTFVFGR
501: DTSRL

Best Arabidopsis Sequence Match ( AT1G07180.1 )
(BLAST)

001: MLWIKNLARI SQTTSSSVGN VFRNPESYTL SSRFCTALQK QQVTDTVQAK EDVVNALEPQ RYDGLAPTKE GEKPRVLVLG SGWAGCRVLK GIDTSIYDVV
101: CVSPRNHMVF TPLLASTCVG TLEFRSVAEP ISRIQPAISR EPGSYYFLAN CSKLDADNHE VHCETVTEGS STLKPWKFKI AYDKLVLACG AEASTFGING
201: VLENAIFLRE VHHAQEIRRK LLLNLMLSEV PGIGEDEKKR LLHCVVVGGG PTGVEFSGEL SDFIMKDVRQ RYSHVKDDIR VTLIEARDIL SSFDDRLRHY
301: AIKQLNKSGV KLVRGIVKEV KPQKLILDDG TEVPYGPLVW STGVGPSSFV RSLDFPKDPG GRIGIDEWMR VPSVQDVFAI GDCSGYLEST GKSTLPALAQ
401: VAEREGKYLA NLFNVMGKAG GGRANSAKEM ELGEPFVYKH LGSMATIGRY KALVDLRESK EGKGISMAGF LSWFIWRSAY LTRVVSWRNR FYVAINWLTT
501: FVFGRDISRI

Arabidopsis Description

NDA1Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GWA1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.