Factsheet for Bra006374.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78714	Canola	plastid	99.65	99.65
CDX70722	Canola	plastid	98.26	98.43
Bra023586.1-P	Field mustard	mitochondrion	91.64	93.26
AT2G20800.1	Thale cress	mitochondrion	89.2	87.97
KRH25488	Soybean	peroxisome	50.7	71.15
Bra029549.1-P	Field mustard	mitochondrion	68.99	68.39
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	67.94	67.83
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	58.88	67.2
Solyc07g054670.2.1	Tomato	unclear	67.25	67.13
GSMUA_Achr4P33660_001	Banana	mitochondrion	65.68	65.11
TraesCS7B01G206900.1	Wheat	mitochondrion	64.63	64.41
TraesCS7D01G303500.1	Wheat	golgi	64.46	64.24
TraesCS7A01G306600.1	Wheat	mitochondrion	64.29	64.06
EES14522	Sorghum	mitochondrion	64.46	63.68
Os05t0331200-01	Rice	mitochondrion	63.59	63.48
Zm00001d049597_P001	Maize	mitochondrion	64.81	62.84
TraesCS3B01G350200.1	Wheat	mitochondrion	62.2	62.63
TraesCS3A01G316500.1	Wheat	mitochondrion	62.37	62.48
TraesCS3D01G314700.1	Wheat	mitochondrion	62.2	62.3
Zm00001d012615_P001	Maize	mitochondrion	62.02	61.59
Zm00001d043266_P002	Maize	mitochondrion	62.02	61.59
GSMUA_Achr3P22940_001	Banana	mitochondrion	62.02	61.49
EES01568	Sorghum	mitochondrion	61.85	61.42
Bra024217.1-P	Field mustard	mitochondrion	60.8	61.23
Os08t0141400-01	Rice	mitochondrion	36.59	58.82
GSMUA_Achr10P...	Banana	mitochondrion	61.32	35.99
Bra030676.1-P	Field mustard	plastid	29.62	33.66
Bra015560.1-P	Field mustard	mitochondrion	29.44	33.2
Bra022768.1-P	Field mustard	mitochondrion	28.92	32.94
Zm00001d004457_P001	Maize	mitochondrion	8.19	29.19

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	EnsemblPlantsGene:Bra006374	EnsemblPlants:Bra006374.1	EnsemblPlants:Bra006374.1-P	InterPro:EF-hand-dom_pair
InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005509	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR002048
InterPro:IPR036188	UniProt:M4CQ85	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469	PFscan:PS50222
PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF47473	SUPFAM:SSF51905	UniParc:UPI000253FD64
SEG:seg	:	:	:	:	:

Description

AT2G20800 (E=4e-291) NDB4 | NDB4 (NAD(P)H dehydrogenase B4); NADH dehydrogenase

Coordinates

chrA03:+:3242792..3245124

Molecular Weight (calculated)

64477.2 Da

IEP (calculated)

9.328

GRAVY (calculated)

-0.352

Length

574 amino acids

Sequence
(BLAST)

001: MSSHSFSKRA YSFFKTYPSA AKLLLLSTCS GGGLLVYSDS NPLKRTLTAD GQETKKKKVV VLGSGWGGYS FLSYLNNPNY DVQVVSPRNF FLFTPLLPSV
101: TNGTVEARSI VEPIRGLMRK KGFEYTEAEC VKIDASNKKI LCRSKDGASK DAKEFDMDYD ILVVAVGAKP NTFNTPGVEE NAHFLKEAED ALKIRQTVIN
201: SFERASLPDL TEEERKKILH FVVVGGGPTG VEFSAELHDF LVEDVAKIYP KVQEFTRITL LEAGDHILNM FDKRITAFAE EKFQRDGIDL KTKNMVVGVT
301: ADEISTKEIA TGRIVSEPYG MVVWSTGIGI RPVIKEFMHQ IGQGQRRVLA TDEWLRVEGC DSVYALGDTA TINQRRVMED IAAIFSKADK GETGTLNKKE
401: FKTVVKDICQ RYPQVELYLK KKKLRNIANL LKSANGDDTE VNIETFKQAL SEVDTQMKNL PATAQVASQQ GKYLAKCFNK MEKCEKKPEG PLRFRGEGRH
501: RFQPFRYRHF GSFAPLGGEQ TAAELPGDWV SIGHSSQWLW YSVYASKLVS WRTRSLVVSD WVRRFIFGRD SSSI

Best Arabidopsis Sequence Match ( AT2G20800.1 )
(BLAST)

001: MSFHSFYQRA SSLFKAYPST SKILLLSTFS GGGGVLVYSD SNPLKRILHA DATLDSDGNP IRKKKVVVLG SGWSGYSFLS YLNNPNYDVQ VVSPRNFFLF
101: TPLLPSVTNG TVEARSIVEP IRGLMRKKGF EYKEAECVKI DASNKKIHCR SKEGSSLKGT TEFDMDYDIL ILAVGAKPNT FNTPGVEEHA YFLKEAEDAL
201: NIRHSVIDCF ERASLPNLTE EERKKILHFV VVGGGPTGVE FSAELHDFLV QDVAKIYPKV QEFTKITLLE AGDHILNMFD KRITAFAEEK FQRDGIDLKT
301: GSMVVGVTAD EISTKERETG KIVSEPYGMV VWSTGIGSRP VIKDFMQQIG QGQRRVLATD EWLRVEGCDG VYALGDTATI NQRRVMEDIA AIFNKADKGN
401: TGTLKKKDFN SVVKDICQRY PQVELYLKKN KLKNIANLLK SANGEDTQVN IEKFKQALSE VDSQMKNLPA TAQVASQQGK YLAKCFNKME KCEKKPEGPL
501: RFRGEGRHRF QPFRYRHFGS FAPLGGEQTA AELPGDWVSI GHSSQWLWYS VYASKLVSWR TRMLVISDWT RRFVFGRDSS SI

Arabidopsis Description

NDB4External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKT7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.