Factsheet for GSMUA_Achr3P22940_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 5
peroxisome 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2648g00010.t01	Wine grape	mitochondrion, peroxisome, plastid	30.22	76.09
GSMUA_Achr4P33660_001	Banana	mitochondrion	75.3	75.3
VIT_00s2376g00010.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	26.77	72.77
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	70.12	70.61
PGSC0003DMT400057712	Potato	mitochondrion	70.81	70.21
Solyc02g079170.2.1	Tomato	nucleus	70.47	69.86
KRH10751	Soybean	mitochondrion	69.43	69.79
KRH21576	Soybean	mitochondrion	69.26	69.62
KRH49945	Soybean	mitochondrion	69.43	69.31
KRH41931	Soybean	mitochondrion	69.08	68.97
AT4G21490.1	Thale cress	cytosol, mitochondrion, peroxisome	67.18	67.07
CDY16620	Canola	mitochondrion	67.01	67.01
Bra029549.1-P	Field mustard	mitochondrion	67.01	67.01
CDY44749	Canola	mitochondrion	66.84	66.84
KRH25488	Soybean	peroxisome	47.15	66.75
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	57.34	66.0
Solyc07g054670.2.1	Tomato	unclear	65.11	65.57
CDY38082	Canola	mitochondrion	63.04	63.48
CDX85484	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	63.04	63.48
Bra023586.1-P	Field mustard	mitochondrion	61.49	63.12
AT4G05020.2	Thale cress	mitochondrion	67.01	62.68
KRH62788	Soybean	cytosol	17.44	62.35
CDX78714	Canola	plastid	61.66	62.2
AT2G20800.1	Thale cress	mitochondrion	62.35	62.03
Bra006374.1-P	Field mustard	plastid	61.49	62.02
CDX70722	Canola	plastid	61.31	61.95
GSMUA_Achr10P...	Banana	mitochondrion	84.97	50.31
GSMUA_Achr7P00100_001	Banana	mitochondrion	26.94	38.61
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	26.25	37.44
GSMUA_Achr5P28430_001	Banana	plastid	31.43	31.6

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G22940_001	EnsemblPlants:GSMUA_Achr3P22940_001
EnsemblPlants:GSMUA_Achr3T22940_001	InterPro:IPR002048	InterPro:IPR036188	UniProt:M0SH10	PFAM:PF07992	PRINTS:PR00368
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	SMART:SM00054	SUPFAM:SSF47473
SUPFAM:SSF51905	UniParc:UPI00029588E4	SEG:seg	:	:	:

Description

Putative Probable NADH dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr3G22940_001]

Coordinates

chr3:+:23775427..23779947

Molecular Weight (calculated)

65110.1 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.244

Length

579 amino acids

Sequence
(BLAST)

001: MRFAAFFLDG AARAYRHRPT FSKLVLVFAA SGGGLVAYAD ARAEVAAESP GVAPKKKVVV LGTGWAGTTF VKNIDSSSYD VQVISPRNYF AFTPLLPSVT
101: CGTVEPRSIV EPIRKIITKK GGEIKFWEAE CFKIDPENKK VYCRSDIGTN LEGNGEFLVD YDYLVIAVGA RANTFNTPGV VEHCHFLKEV EDAQKIRRSV
201: MDCFERATLP DLDEEERKRT LHFVVVGGGP TGVEFAAELH DFVSEDLAKL YPTIQDLVKI TVIEHGEHIL TMFDKRISKF AEEKFQRDGI ELKTGFKVVK
301: VSDKTITMEN ALHGESSVPY GMAVWSTGIG TRPVILDFMK QIGQGNRRAL ATDEWLRVRE CENVCAIGDC ATMSQRKVME DIMEIFRFAD KDNSGTLTVK
401: EIQDVLEDIC IRYPQVELYL KNKQMSDIVD LIKASKGDVK KEALELNIEE FKNALANVDS LVKNLPATAQ VAAQQGNYLA RCFNRMKDSE EKPEGPQRIT
501: KMGRHRFLPF SYKHFGQFAP LGGEQTAAQL PGDWISIGHS TQWLWYSIYA SKQVSWRTRA LVISDWTRRF IFGRDSSRI

Best Arabidopsis Sequence Match ( AT4G21490.1 )
(BLAST)

001: MRPFAYFERL SQAFHDYPSL SKILVVSTIS GGGLIVYSEA NPSYSNNGVE TKTRKRKVVL LGTGWAGASF LKTLNNSSYE VQVISPRNYF AFTPLLPSVT
101: CGTVEARSVV EPIRNIARKQ NVEMSFLEAE CFKIDPGSKK VYCRSKQGVN SKGKKEFDVD YDYLVIATGA QSNTFNIPGV EENCHFLKEV EDAQRIRSTV
201: IDSFEKASLP GLNEQERKRM LHFVVVGGGP TGVEFASELH DFVNEDLVKL YPKAKNLVQI TLLEAADHIL TMFDKRITEF AEEKFTRDGI DVKLGSMVVK
301: VNDKEISAKT KAGEVSTIPY GMIVWSTGIG TRPVIKDFMK QIGQGNRRAL ATDEWLRVEG CDNIYALGDC ATINQRKVME DIAAIFKKAD KENSGTLTMK
401: EFHEVMSDIC DRYPQVELYL KSKGMHGITD LLKQAQAENG SNKSVELDIE ELKSALCQVD SQVKLLPATG QVAAQQGTYL AKCFDRMEVC EKNPEGPIRI
501: RGEGRHRFRP FRYRHLGQFA PLGGEQTAAQ LPGDWVSIGH SSQWLWYSVY ASKQVSWRTR VLVVSDWMRR FIFGRDSSRI

Arabidopsis Description

NDB3External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JJJ3]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.