Factsheet for Solyc02g079170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057712	Potato	mitochondrion	99.49	99.49
KRH49945	Soybean	mitochondrion	76.88	77.41
KRH21576	Soybean	mitochondrion	76.2	77.26
KRH10751	Soybean	mitochondrion	76.2	77.26
KRH41931	Soybean	mitochondrion	76.71	77.24
AT4G21490.1	Thale cress	cytosol, mitochondrion, peroxisome	75.51	76.03
CDY16620	Canola	mitochondrion	75.34	75.99
Bra029549.1-P	Field mustard	mitochondrion	75.34	75.99
CDY44749	Canola	mitochondrion	75.17	75.82
KRH62788	Soybean	cytosol	19.86	71.6
AT4G05020.2	Thale cress	mitochondrion	75.86	71.57
Solyc07g054670.2.1	Tomato	unclear	69.69	70.78
GSMUA_Achr3P22940_001	Banana	mitochondrion	69.86	70.47
GSMUA_Achr4P33660_001	Banana	mitochondrion	69.69	70.29
TraesCS7D01G303500.1	Wheat	golgi	68.49	69.44
TraesCS7B01G206900.1	Wheat	mitochondrion	68.49	69.44
TraesCS7A01G306600.1	Wheat	mitochondrion	68.32	69.27
EES14522	Sorghum	mitochondrion	68.32	68.67
Zm00001d049597_P001	Maize	mitochondrion	68.15	67.23
Zm00001d012615_P001	Maize	mitochondrion	66.27	66.95
Os05t0331200-01	Rice	mitochondrion	65.41	66.43
Zm00001d043266_P002	Maize	mitochondrion	65.58	66.26
EES01568	Sorghum	mitochondrion	65.58	66.26
TraesCS3B01G350200.1	Wheat	mitochondrion	64.21	65.79
TraesCS3D01G314700.1	Wheat	mitochondrion	64.38	65.62
TraesCS3A01G316500.1	Wheat	mitochondrion	64.21	65.44
Solyc10g008630.2.1	Tomato	mitochondrion	64.21	64.99
Solyc07g054640.1.1	Tomato	mitochondrion	63.7	64.7
Os08t0141400-01	Rice	mitochondrion	39.21	64.15
GSMUA_Achr10P...	Banana	mitochondrion	68.15	40.7
Solyc06g007160.2.1	Tomato	plastid	30.48	35.96
Solyc02g078900.2.1	Tomato	plastid	30.65	32.72
Zm00001d004457_P001	Maize	mitochondrion	8.39	30.43
HORVU4Hr1G058410.1	Barley	nucleus	11.47	19.76

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR002048	InterPro:IPR036188	UniProt:K4B9E1
PFAM:PF00036	PFAM:PF07992	PRINTS:PR00368	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706
PANTHER:PTHR43706:SF5	SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF51905	EnsemblPlantsGene:Solyc02g079170.2	EnsemblPlants:Solyc02g079170.2.1
UniParc:UPI00027686A3	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:43782210..43787819

Molecular Weight (calculated)

65993.8 Da

IEP (calculated)

8.181

GRAVY (calculated)

-0.363

Length

584 amino acids

Sequence
(BLAST)

001: MQRVTVIERF SKTFRDNPSL SKLLIVFTVS GGGLVAYSEA GKSNDNSNAG ALVEANNRKK KVVVLGTGWA GTSFLKNLKD PSYDVQVISP RNYFAFTPLL
101: PSVTCGTVES RSVVEPIRNI IRKRYAEAYY WEAECIKIDP ENKKVYCRSN LSTNGNGKEE FAVDYDYLVI ATGARVNTFN IPGVEENTFF LKEVEDAQKI
201: RRTVIDCFEK ASLPTLSDEE RKRLLHFVIV GGGPTGVEFA AQLHDFVNED IVRLYPKVKD LVKITLLEAT DHILNMFDKR ITAFAEEKFH RDGIDVKTGS
301: MVVKVGEKEI STKDVKRGEI TSMPYGMAVW STGIGTRPVI MEFMKHIGQG SRRVLATDEW LRVEGQENVY ALGDCATINQ RKVMEDIAAI FQKADKDNSG
401: TLTVKEFQEV LNDICERYPQ VELYLKNKKM SNLVDLLKES KGNGVKESIE VDIEEFKSAL SQVDTDMKNL PATAQVASQQ GVYLAKCFNR MEECEKNPEG
501: PLRFRGEGRH RFHPFRYRHL GQFAPLGGEQ TAAQLPGDWV SIGHSSQWLW YSVYASKQVS WRTRALVVSD WVRRFIFGRD SSQI

Best Arabidopsis Sequence Match ( AT4G05020.1 )
(BLAST)

001: MRNFSVFERF SKAFKDHPSL TRILVVSTIS GGGLIAYSEA NASYGANGGA VVETGTKKKK VVLLGTGWAG TSFLKNLNNS QYEVQIISPR NYFAFTPLLP
101: SVTCGTVEAR SVVEPIRNIG RKNVDTSYLE AECFKIDPAS KKVYCRSKQG LSSNGKKEFS VDYDYLVIAT GAQSNTFNIP GVEENCHFLK EVEDAQRIRK
201: TVIDSFEKAS LPELSDEERK RILHFVVVGG GPTGVEFAAE LHDFVTEDLV SLYPRAKGSV RITLLEAADH ILTMFDKRIT EFAEEKFSRD GIDVKLGSMV
301: TKVNEKDISA KTKGGEVSSI PYGMIVWSTG IGTRPVIKDF MKQIGQGNRR ALATDEWLRV EGTDNIYALG DCATINQRKV MEDVSAIFSK ADKDKSGTLT
401: LKEFQEAMDD ICVRYPQVEL YLKSKRMRGI ADLLKEAETD DVSKNNIELK IEEFKSALSQ VDSQVKFLPA TAQVAAQQGA YLAKCFDRME ECEKSPEGPI
501: RMRGEGRHRF RPFRYRHLGQ FAPLGGEQTA AQLPGDWVSI GHSSQWLWYS VYASKQVSWR TRVLVVSDWM RRFIFGRDSS SI

Arabidopsis Description

NDB2NAD(P)H dehydrogenase B2 [Source:UniProtKB/TrEMBL;Acc:F4JGL5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.