Factsheet for Solyc07g054640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047210	Potato	cytosol	53.04	99.03
Solyc10g008630.2.1	Tomato	mitochondrion	80.87	80.59
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	72.52	72.27
KRH25490	Soybean	mitochondrion	70.09	70.33
CDY29891	Canola	mitochondrion	68.0	68.6
Bra024217.1-P	Field mustard	mitochondrion	67.83	68.42
CDY58724	Canola	mitochondrion	67.83	68.42
AT4G28220.1	Thale cress	mitochondrion	67.65	68.13
Solyc02g079170.2.1	Tomato	nucleus	64.7	63.7
Solyc07g054670.2.1	Tomato	unclear	62.26	62.26
KRH56037	Soybean	extracellular, plasma membrane	31.83	54.3
KRH26903	Soybean	mitochondrion	21.74	52.97
Solyc06g007160.2.1	Tomato	plastid	32.0	37.17
Solyc02g078900.2.1	Tomato	plastid	30.61	32.18

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003955	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019646	GO:GO:0055114
InterPro:IPR002048	InterPro:IPR036188	UniProt:K4CG06	PFAM:PF07992	PRINTS:PR00368	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	SUPFAM:SSF47473	SUPFAM:SSF51905	EnsemblPlantsGene:Solyc07g054640.1
EnsemblPlants:Solyc07g054640.1.1	UniParc:UPI000276C5F7	:	:	:	:

Description

No Description!

Coordinates

chr7:+:62906106..62911442

Molecular Weight (calculated)

64947.4 Da

IEP (calculated)

6.354

GRAVY (calculated)

-0.220

Length

575 amino acids

Sequence
(BLAST)

001: MRGFSYLKKA LHIRSCSRLL VASCISSGGL LVYAENVDNN EKIVERSRLD SKKRKKVVVL GTGWAGTSFL KDMDISSYDI EVVSPRNYFA FTPLLPSVTC
101: GTVEARSVVE PVRNIIKKRN GEIQFWEAEC LKIDPENHQV ICRSTVENLV GENNFSLDYD HLVVAVGAQV NTFDTPGVVE HCHFLKEVED AQKIRRTVID
201: CFEKAVLPGL SDEERRTNLH FVIVGGGPTG VEFAAELHDF VHDDLVKLYP SVKDLVKITV IQSGDHILNT FDERISCFAE TKFQRDGIEV LTGCRVVSVS
301: EHSVNMKVKS TGEYVVVPHG MVVWSTGVGT RPFVRNFMEE IGQGKRWILA TDEWLRVKDC PDVYAIGDCT TVDQRKIMED ISTIFEAADT DRSGTLTIKE
401: FQDVLEDIII RYPQVELYLK SNHLFQVTEL FKDSEGNERE EVDIEGFKLA LSHVDSQMKS LPATAQVAAQ QGSYLAGCFN RWEQCNANPE GPRLFGSAGR
501: HAFRPFTYRH LGQFAPLGGS KAAAELPGDW VSMGRSTQWL WYSVYASKQV SWRTRILVVW DWTRRYIFGR DSSRI

Best Arabidopsis Sequence Match ( AT4G28220.1 )
(BLAST)

001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

Arabidopsis Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q1JPL4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.