Factsheet for PGSC0003DMT400047210

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054640.1.1	Tomato	mitochondrion	99.03	53.04
KRH56037	Soybean	extracellular, plasma membrane	56.17	51.34
PGSC0003DMT400055796	Potato	mitochondrion	80.84	43.15
KRH25490	Soybean	mitochondrion	72.4	38.92
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	72.4	38.65
CDY29891	Canola	mitochondrion	70.13	37.89
CDY58724	Canola	mitochondrion	69.81	37.72
Bra024217.1-P	Field mustard	mitochondrion	69.48	37.54
AT4G28220.1	Thale cress	mitochondrion	69.48	37.48
PGSC0003DMT400057712	Potato	mitochondrion	65.58	34.59
PGSC0003DMT400010678	Potato	mitochondrion, peroxisome, plastid	26.95	16.77
PGSC0003DMT400057603	Potato	mitochondrion	25.0	14.08
KRH26903	Soybean	mitochondrion	4.55	5.93

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR002048	InterPro:IPR036188	UniProt:M1BKA7
PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG400018325	PGSC:PGSC0003DMG400018325	EnsemblPlants:PGSC0003DMT400047210	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	SUPFAM:SSF47473	SUPFAM:SSF51905	UniParc:UPI0002950667	:

Description

External rotenone-insensitive NADPH dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400018325]

Coordinates

chr7:-:48491279..48494372

Molecular Weight (calculated)

35252.8 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.338

Length

308 amino acids

Sequence
(BLAST)

001: MCRFDERISC FAETKFQRDG IEVLTGCRVV RVSEHSVNMK VKSTGEYVVV PHGMVVWSTG VGTRPFVRDF MEEIGQGKRW ILATDEWLRV KDCPDVYAIG
101: DCTTVDQRKI MEDISTIFEA ADTDRSGTLT IEEFQDVLED IIIRYPQVEL YLKSNHLFQV TELFKDSEGN EREEVDIEGF KLALSHVDSQ MKSLPATAQV
201: AAQQGSYLAG CFNRWEQCNA NPEGPRLFGS AGRHAFRPFT YRHLGQFAPL GGSKAAAELP GDWVSMGRST QWLWYSVYAS KQVSWRTRIL VVWDWTRRYI
301: FGRDSSRI

Best Arabidopsis Sequence Match ( AT4G28220.1 )
(BLAST)

001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

Arabidopsis Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q1JPL4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.