Factsheet for PGSC0003DMT400057712

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g079170.2.1	Tomato	nucleus	99.49	99.49
KRH49945	Soybean	mitochondrion	77.05	77.59
KRH41931	Soybean	mitochondrion	76.88	77.41
KRH21576	Soybean	mitochondrion	76.03	77.08
KRH10751	Soybean	mitochondrion	76.03	77.08
AT4G21490.1	Thale cress	cytosol, mitochondrion, peroxisome	75.51	76.03
CDY16620	Canola	mitochondrion	75.34	75.99
Bra029549.1-P	Field mustard	mitochondrion	75.34	75.99
CDY44749	Canola	mitochondrion	75.17	75.82
AT4G05020.2	Thale cress	mitochondrion	75.86	71.57
KRH62788	Soybean	cytosol	19.69	70.99
GSMUA_Achr3P22940_001	Banana	mitochondrion	70.21	70.81
GSMUA_Achr4P33660_001	Banana	mitochondrion	69.69	70.29
TraesCS7D01G303500.1	Wheat	golgi	68.84	69.79
TraesCS7B01G206900.1	Wheat	mitochondrion	68.84	69.79
TraesCS7A01G306600.1	Wheat	mitochondrion	68.66	69.62
EES14522	Sorghum	mitochondrion	68.49	68.85
Zm00001d049597_P001	Maize	mitochondrion	68.32	67.4
Zm00001d012615_P001	Maize	mitochondrion	66.44	67.13
Os05t0331200-01	Rice	mitochondrion	65.58	66.61
Zm00001d043266_P002	Maize	mitochondrion	65.75	66.44
EES01568	Sorghum	mitochondrion	65.75	66.44
TraesCS3B01G350200.1	Wheat	mitochondrion	64.38	65.96
TraesCS3D01G314700.1	Wheat	mitochondrion	64.55	65.79
TraesCS3A01G316500.1	Wheat	mitochondrion	64.38	65.62
PGSC0003DMT400047210	Potato	cytosol	34.59	65.58
PGSC0003DMT400055796	Potato	mitochondrion	63.7	64.47
Os08t0141400-01	Rice	mitochondrion	39.38	64.43
GSMUA_Achr10P...	Banana	mitochondrion	68.49	40.9
PGSC0003DMT400010678	Potato	mitochondrion, peroxisome, plastid	30.65	36.16
PGSC0003DMT400057603	Potato	mitochondrion	30.82	32.91
Zm00001d004457_P001	Maize	mitochondrion	8.39	30.43
HORVU4Hr1G058410.1	Barley	nucleus	11.47	19.76

Protein Annotations

EntrezGene:102595528	MapMan:2.4.2.1.2	Gene3D:3.50.50.100	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR002048	InterPro:IPR036188
UniProt:M1C1I3	PFAM:PF00036	PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG400022405	PGSC:PGSC0003DMG400022405	EnsemblPlants:PGSC0003DMT400057712
PRINTS:PR00368	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF5	SMART:SM00054
SUPFAM:SSF47473	SUPFAM:SSF51905	UniParc:UPI0002968F00	RefSeq:XP_006347139.1	RefSeq:XP_015164172.1	:

Description

NADH dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400022405]

Coordinates

chr2:+:34897309..34905597

Molecular Weight (calculated)

66112.9 Da

IEP (calculated)

7.990

GRAVY (calculated)

-0.378

Length

584 amino acids

Sequence
(BLAST)

001: MQRVTVIERF SKTFRDNPSF SKLLIVFTVS GGGLVAYSEA GKSNDNSNAG ELVEANNRKK KVVVLGTGWA GTSFLKNLKD PSYDVQVISP RNYFAFTPLL
101: PSVTCGTVES RSVVEPIRNI IRKRYAEAYY WEAECIKIDP ENKKVYCRSN LSTNGNGKEE FAVDYDYLVI ATGARVNTFN IPGVEENTFF LKEVEDAQKI
201: RRTVIDCFEK ASLPTLSDEE RKRLLHFVIV GGGPTGVEFA AQLHDFVNED IVRLYPKVKD LVKITLLEAT DHILNMFDKR ITAFAEEKFH RDGIDVKTGS
301: MVVKVGEKEI STKDVKRGEI TSMPYGMAVW STGIGTRPVI MEFMKHIGQG NRRVLATDEW LRVEGQENVY ALGDCATINQ RKVMEDIAAI FQKADKDNSG
401: TLTVKEFQEV LNDICERYPQ VELYLKNKKM SNLVDLLKES KGNGVKESIE VDIEEFKSAL SQVDTDMKNL PATAQVASQQ GVYLAKCFNR MEECEKNPEG
501: PLRFRGEGRH RFHPFRYRHL GQFAPLGGEQ TAAQLPGDWV SIGHSSQWLW YSVYASKQVS WRTRALVVSD WVRRFIFGRD SSQI

Best Arabidopsis Sequence Match ( AT4G05020.1 )
(BLAST)

001: MRNFSVFERF SKAFKDHPSL TRILVVSTIS GGGLIAYSEA NASYGANGGA VVETGTKKKK VVLLGTGWAG TSFLKNLNNS QYEVQIISPR NYFAFTPLLP
101: SVTCGTVEAR SVVEPIRNIG RKNVDTSYLE AECFKIDPAS KKVYCRSKQG LSSNGKKEFS VDYDYLVIAT GAQSNTFNIP GVEENCHFLK EVEDAQRIRK
201: TVIDSFEKAS LPELSDEERK RILHFVVVGG GPTGVEFAAE LHDFVTEDLV SLYPRAKGSV RITLLEAADH ILTMFDKRIT EFAEEKFSRD GIDVKLGSMV
301: TKVNEKDISA KTKGGEVSSI PYGMIVWSTG IGTRPVIKDF MKQIGQGNRR ALATDEWLRV EGTDNIYALG DCATINQRKV MEDVSAIFSK ADKDKSGTLT
401: LKEFQEAMDD ICVRYPQVEL YLKSKRMRGI ADLLKEAETD DVSKNNIELK IEEFKSALSQ VDSQVKFLPA TAQVAAQQGA YLAKCFDRME ECEKSPEGPI
501: RMRGEGRHRF RPFRYRHLGQ FAPLGGEQTA AQLPGDWVSI GHSSQWLWYS VYASKQVSWR TRVLVVSDWM RRFIFGRDSS SI

Arabidopsis Description

NDB2NAD(P)H dehydrogenase B2 [Source:UniProtKB/TrEMBL;Acc:F4JGL5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.