Factsheet for PGSC0003DMT400055796

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
peroxisome 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008630.2.1	Tomato	mitochondrion	96.88	96.88
PGSC0003DMT400047210	Potato	cytosol	43.15	80.84
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	73.31	73.31
KRH25490	Soybean	mitochondrion	70.36	70.86
CDY29891	Canola	mitochondrion	69.67	70.53
CDY58724	Canola	mitochondrion	69.5	70.35
AT4G28220.1	Thale cress	mitochondrion	69.32	70.05
Bra024217.1-P	Field mustard	mitochondrion	69.15	70.0
PGSC0003DMT400057712	Potato	mitochondrion	64.47	63.7
KRH26903	Soybean	mitochondrion	23.4	57.2
KRH56037	Soybean	extracellular, plasma membrane	31.89	54.6
PGSC0003DMT400010678	Potato	mitochondrion, peroxisome, plastid	31.72	36.97
PGSC0003DMT400057603	Potato	mitochondrion	29.64	31.26

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	EMBL:AEWC01039998	EMBL:AJ245862	ProteinID:CAB52797	ProteinID:CAB52797.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005758	GO:GO:0005777	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPR002048
InterPro:IPR036188	UniProt:M1BYJ7	PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG400021670	PGSC:PGSC0003DMG400021670	EnsemblPlants:PGSC0003DMT400055796
PRINTS:PR00368	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	SMART:SM00054
SUPFAM:SSF47473	SUPFAM:SSF51905	UniParc:UPI000295F44B	:	:	:

Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:M1BYJ7]

Coordinates

chr10:+:4157577..4163576

Molecular Weight (calculated)

65192.3 Da

IEP (calculated)

6.461

GRAVY (calculated)

-0.328

Length

577 amino acids

Sequence
(BLAST)

001: MRGFTYLSKV LHSHSSYSKL LVLCSVSTGG LLVYAESNVE SGKQVVEQNQ PESKKKRVVV LGTGWGGTSF LKDVDISSYD VQVVSPRNYF AFTPLLPSVT
101: CGTVEARSIV EPVRNIIKKR SGEIQFWEAE CLKIDPENRT VSCRSGINDN LAGQNDFSLQ YDYLVVAVGA QVNTFNTPGV MEHCHFLKEV EDAQRIRRTV
201: IDCFEKSVIP GLSEEERRTN LHFVIVGGGP TGVEFAAELH DYVYEDLVKI YPSVKDFVKI TVIQSGDHIL NTFDERISSF AEQKFQRDGI EVSTGCRVTS
301: VSDHFINMKV KSTGKHVEVP YGMVVWSTGV GTRPFVKDFM EQVGQEKRRI LATDEWLRVK GCSNVYALGD CASIDQRKVM EDISAIFKAA DKDDSGTLSI
401: EEFRDVLEDI IIRYPQVDLY LKNKHLLEAK DLFRDSEGNE REEVDIEGFK LALSHVDSQM KSLPATAQVA AQQGTYLSRC LNRWDQCKSN PEGPRHFKSS
501: GRHEFLPFEY RHLGQFAPLG GDQAAAELPG DWVSMGHSTQ WLWYSVYASK QVSWRTRYLV VGDWVRRYIF GRDSSRI

Best Arabidopsis Sequence Match ( AT4G28220.1 )
(BLAST)

001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

Arabidopsis Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q1JPL4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.