CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22445	Soybean	peroxisome	7.5	84.31
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	74.69	74.18
PGSC0003DMT400047210	Potato	cytosol	38.92	72.4
KRH56037	Soybean	extracellular, plasma membrane	41.71	70.92
PGSC0003DMT400055796	Potato	mitochondrion	70.86	70.36
Solyc07g054640.1.1	Tomato	mitochondrion	70.33	70.09
AT4G28220.1	Thale cress	mitochondrion	69.63	69.88
Solyc10g008630.2.1	Tomato	mitochondrion	70.33	69.84
CDY29891	Canola	mitochondrion	69.28	69.65
Bra024217.1-P	Field mustard	mitochondrion	69.11	69.47
CDY58724	Canola	mitochondrion	68.94	69.3
KRH21576	Soybean	mitochondrion	65.1	64.76
KRH10751	Soybean	mitochondrion	65.1	64.76
KRH41931	Soybean	mitochondrion	64.92	64.14
KRH49945	Soybean	mitochondrion	64.92	64.14
KRH25488	Soybean	peroxisome	45.2	63.33
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	54.8	62.43
KRH26903	Soybean	mitochondrion	25.65	62.29
KRH62788	Soybean	cytosol	16.58	58.64
KRH72693	Soybean	mitochondrion	29.84	35.26
KRH17048	Soybean	mitochondrion	29.84	35.26
KRG98274	Soybean	mitochondrion	30.72	34.78
KRH17976	Soybean	cytosol	11.69	34.54
KRH30292	Soybean	mitochondrion	30.37	34.18
KRH49960	Soybean	mitochondrion	30.19	31.45
KRH41912	Soybean	mitochondrion	29.14	30.36

Protein Annotations

EntrezGene:100793566	MapMan:2.4.2.1.2	Gene3D:3.50.50.100	UniProt:A0A0R0HAR3	EMBL:ACUP02007266	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EnsemblPlantsGene:GLYMA_12G107000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:IPR002048	InterPro:IPR036188	EnsemblPlants:KRH25490	ProteinID:KRH25490	ProteinID:KRH25490.1
PFAM:PF00036	PFAM:PF07992	PRINTS:PR00368	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706
PANTHER:PTHR43706:SF3	SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF51905	SignalP:SignalP-noTM	UniParc:UPI0006ED7B72

Description

hypothetical protein

Coordinates

chr12:-:9804141..9809435

Molecular Weight (calculated)

64321.4 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.243

Length

573 amino acids

Sequence
(BLAST)

001: MTVGSFFIRT SRVLNSSNFL LLCTLSGGGV VAYSESQSGA ERPSIEANEP AKKKVVVLGT GWAATSFLKD LDASLYDVQV VSPRNYFAFT PLLPSVTCGT
101: VEARSIVEPV RNIIKKRKGE VNFWEAECVK IDYSNKKVFC RSNIDNLVGS NEFSLDYDFL VVAVGAQVNT FNTPGVKENC HFLKDVEDAQ KIRLSVIDCF
201: EKAVLPSLSD DERRSNLHFI VVGGGPTGVE FAAELHDYVQ EDLIKLYPTV KDKVKITLIQ SGDHILNMFD ERISSFAEQK FTRDGVEVQT GCRVVAVNDK
301: DITVKVKSTG DVCSVPHGLI VWSTGISTLP VIRDFMEEIG QTKRHVLATN EWLRVNGCED VYAIGDCSSI TQRKIMDDIT AIFEAADKNN SGTLTIEEFQ
401: EVMDDIILRY PQVEQYLKQK HLRDFTTLWK DLQGNESKEI DIQAFKLALS HADSQVKSLP ATAQVAAQQG AYLARCFNRR DHTEENPEGP RRFSGSGRHR
501: FLPFRYRHLG QFAPLGGEQA AAELPGDWVS MGHSTQWLWY SVYASKQVSW RTRVLVMSDW TRRFIFGRDS SRV

Best Arabidopsis Sequence Match ( AT4G28220.1 )
(BLAST)

001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

Arabidopsis Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q1JPL4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.