CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21576	Soybean	mitochondrion	96.88	96.88
KRH49945	Soybean	mitochondrion	86.98	86.38
KRH41931	Soybean	mitochondrion	86.98	86.38
KRH22445	Soybean	peroxisome	7.12	80.39
KRH62788	Soybean	cytosol	22.22	79.01
Solyc02g079170.2.1	Tomato	nucleus	77.26	76.2
PGSC0003DMT400057712	Potato	mitochondrion	77.08	76.03
Bra029549.1-P	Field mustard	mitochondrion	73.61	73.23
CDY16620	Canola	mitochondrion	73.61	73.23
AT4G21490.1	Thale cress	cytosol, mitochondrion, peroxisome	73.44	72.93
CDY44749	Canola	mitochondrion	73.09	72.71
KRH25488	Soybean	peroxisome	50.69	71.39
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	61.46	70.38
TraesCS7D01G303500.1	Wheat	golgi	69.44	69.44
TraesCS7B01G206900.1	Wheat	mitochondrion	69.44	69.44
GSMUA_Achr3P22940_001	Banana	mitochondrion	69.79	69.43
TraesCS7A01G306600.1	Wheat	mitochondrion	69.1	69.1
EES14522	Sorghum	mitochondrion	69.27	68.67
AT4G05020.2	Thale cress	mitochondrion	73.61	68.5
GSMUA_Achr4P33660_001	Banana	mitochondrion	68.06	67.7
Zm00001d049597_P001	Maize	mitochondrion	69.1	67.23
Zm00001d012615_P001	Maize	mitochondrion	66.67	66.44
Os05t0331200-01	Rice	mitochondrion	66.15	66.26
TraesCS3B01G350200.1	Wheat	mitochondrion	65.1	65.79
EES01568	Sorghum	mitochondrion	65.97	65.74
Zm00001d043266_P002	Maize	mitochondrion	65.62	65.4
TraesCS3D01G314700.1	Wheat	mitochondrion	64.93	65.27
TraesCS3A01G316500.1	Wheat	mitochondrion	64.76	65.1
KRH25490	Soybean	mitochondrion	64.76	65.1
Os08t0141400-01	Rice	mitochondrion	38.37	61.9
KRH26903	Soybean	mitochondrion	21.7	52.97
KRH56037	Soybean	extracellular, plasma membrane	29.34	50.15
GSMUA_Achr10P...	Banana	mitochondrion	67.71	39.88
KRH17976	Soybean	cytosol	11.98	35.57
KRH72693	Soybean	mitochondrion	29.17	34.64
KRH17048	Soybean	mitochondrion	28.99	34.43
KRH30292	Soybean	mitochondrion	29.34	33.2
KRG98274	Soybean	mitochondrion	29.17	33.2
KRH49960	Soybean	mitochondrion	29.69	31.09
KRH41912	Soybean	mitochondrion	29.51	30.91
Zm00001d004457_P001	Maize	mitochondrion	8.51	30.43

Protein Annotations

EntrezGene:100802661	MapMan:2.4.2.1.2	Gene3D:3.50.50.100	EMBL:ACUP02009157	ncoils:Coil	InterPro:EF-hand-dom_pair
InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EnsemblPlantsGene:GLYMA_15G067300	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
UniProt:I1MEA0	InterPro:IPR002048	InterPro:IPR036188	EnsemblPlants:KRH10751	ProteinID:KRH10751	ProteinID:KRH10751.1
PFAM:PF07992	PRINTS:PR00368	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF5	SUPFAM:SSF47473
SUPFAM:SSF51905	UniParc:UPI000233B8CD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:5129271..5134379

Molecular Weight (calculated)

64894.8 Da

IEP (calculated)

8.447

GRAVY (calculated)

-0.324

Length

576 amino acids

Sequence
(BLAST)

001: MSSITFFQHL SRAFRDNQSH LKLVLLCTAV SGGGLWAYGE SVAPEEAVSE KKKVVVLGTG WAATSFMKNL KNPKYEVQVV SPRNYFAFTP LLPSVTCGTV
101: EARSIVEPVR NIFKKKVDVQ FSEAECFKID AENRKVYCRS SVNNNLNGKE EFVVDYDYLI VAVGANVNTF NTPGVTENCH FLKEVEDAKK IRRTVIDCFE
201: RANLPDVSED EKKRILHFAI VGGGPTGVEF AASLHDFVNE DLLRLYPGIK DLVKITLLEA GDHILGMFDK RITTFAEDKF RRDGIDVKTG SMVVKVSEKE
301: ISTKELKNGG EIKTIPYGMA VWSTGIGTRP FIKDFMAQIG QASRRALATD EWLRVEGCSN VYALGDCATI NQRKVMEDIV AIFKKADKES SGTLTVKQFQ
401: EVMKDICERY PQVELYLKNK QMHNIADLLK EAKGDDKKES IELNIEELKT ALSKVDSQMK FLPATAQVAS QQGTYLAKCF NRMEECEKNP EGPLRFRGEG
501: HHRFKPFRYK HLGQFAPLGG EQTAAQLPGD WVSIGHSSQW LWYSVYASKQ VSWRTRALVV SDWTRRFIFG RDSSSI

Best Arabidopsis Sequence Match ( AT4G05020.1 )
(BLAST)

001: MRNFSVFERF SKAFKDHPSL TRILVVSTIS GGGLIAYSEA NASYGANGGA VVETGTKKKK VVLLGTGWAG TSFLKNLNNS QYEVQIISPR NYFAFTPLLP
101: SVTCGTVEAR SVVEPIRNIG RKNVDTSYLE AECFKIDPAS KKVYCRSKQG LSSNGKKEFS VDYDYLVIAT GAQSNTFNIP GVEENCHFLK EVEDAQRIRK
201: TVIDSFEKAS LPELSDEERK RILHFVVVGG GPTGVEFAAE LHDFVTEDLV SLYPRAKGSV RITLLEAADH ILTMFDKRIT EFAEEKFSRD GIDVKLGSMV
301: TKVNEKDISA KTKGGEVSSI PYGMIVWSTG IGTRPVIKDF MKQIGQGNRR ALATDEWLRV EGTDNIYALG DCATINQRKV MEDVSAIFSK ADKDKSGTLT
401: LKEFQEAMDD ICVRYPQVEL YLKSKRMRGI ADLLKEAETD DVSKNNIELK IEEFKSALSQ VDSQVKFLPA TAQVAAQQGA YLAKCFDRME ECEKSPEGPI
501: RMRGEGRHRF RPFRYRHLGQ FAPLGGEQTA AQLPGDWVSI GHSSQWLWYS VYASKQVSWR TRVLVVSDWM RRFIFGRDSS SI

Arabidopsis Description

NDB2NAD(P)H dehydrogenase B2 [Source:UniProtKB/TrEMBL;Acc:F4JGL5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.