CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49945	Soybean	mitochondrion	98.1	98.1
KRH21576	Soybean	mitochondrion	86.55	87.15
KRH10751	Soybean	mitochondrion	86.38	86.98
KRH22445	Soybean	peroxisome	7.07	80.39
PGSC0003DMT400057712	Potato	mitochondrion	77.41	76.88
Solyc02g079170.2.1	Tomato	nucleus	77.24	76.71
CDY16620	Canola	mitochondrion	73.62	73.75
Bra029549.1-P	Field mustard	mitochondrion	73.62	73.75
KRH62788	Soybean	cytosol	20.52	73.46
CDY44749	Canola	mitochondrion	73.28	73.4
AT4G21490.1	Thale cress	cytosol, mitochondrion, peroxisome	72.93	72.93
KRH25488	Soybean	peroxisome	50.86	72.13
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	61.38	70.78
TraesCS7B01G206900.1	Wheat	mitochondrion	69.31	69.79
TraesCS7D01G303500.1	Wheat	golgi	69.31	69.79
TraesCS7A01G306600.1	Wheat	mitochondrion	68.97	69.44
AT4G05020.2	Thale cress	mitochondrion	73.97	69.31
GSMUA_Achr4P33660_001	Banana	mitochondrion	68.97	69.08
GSMUA_Achr3P22940_001	Banana	mitochondrion	68.97	69.08
EES14522	Sorghum	mitochondrion	68.97	68.85
Zm00001d012615_P001	Maize	mitochondrion	67.24	67.47
Zm00001d049597_P001	Maize	mitochondrion	68.79	67.4
EES01568	Sorghum	mitochondrion	66.38	66.61
Os05t0331200-01	Rice	mitochondrion	66.03	66.61
Zm00001d043266_P002	Maize	mitochondrion	66.21	66.44
TraesCS3B01G350200.1	Wheat	mitochondrion	64.83	65.96
TraesCS3D01G314700.1	Wheat	mitochondrion	65.0	65.79
TraesCS3A01G316500.1	Wheat	mitochondrion	64.48	65.27
KRH25490	Soybean	mitochondrion	64.14	64.92
Os08t0141400-01	Rice	mitochondrion	38.97	63.31
KRH26903	Soybean	mitochondrion	22.24	54.66
KRH56037	Soybean	extracellular, plasma membrane	29.14	50.15
GSMUA_Achr10P...	Banana	mitochondrion	68.28	40.49
KRH72693	Soybean	mitochondrion	30.0	35.88
KRH17048	Soybean	mitochondrion	29.66	35.46
KRH17976	Soybean	cytosol	11.55	34.54
KRG98274	Soybean	mitochondrion	29.66	33.99
KRH30292	Soybean	mitochondrion	29.83	33.99
KRH49960	Soybean	mitochondrion	30.17	31.82
KRH41912	Soybean	mitochondrion	30.0	31.64
Zm00001d004457_P001	Maize	mitochondrion	8.28	29.81

Protein Annotations

EntrezGene:100800518	MapMan:2.4.2.1.2	Gene3D:3.50.50.100	EMBL:ACUP02004781	ncoils:Coil	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EnsemblPlantsGene:GLYMA_08G059300	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:IPR002048	InterPro:IPR036188	UniProt:K7L567	EnsemblPlants:KRH41931	ProteinID:KRH41931
ProteinID:KRH41931.1	PFAM:PF00036	PFAM:PF07992	PRINTS:PR00368	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR43706	PANTHER:PTHR43706:SF5	SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF51905	UniParc:UPI0002338269
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:4529233..4535966

Molecular Weight (calculated)

65275.1 Da

IEP (calculated)

7.913

GRAVY (calculated)

-0.284

Length

580 amino acids

Sequence
(BLAST)

001: MWSFTFFERV SRAFRDHGSN FKLVLLCTTV SGGGVLAYGE AVAASEAAAT TTEKKKVVVL GTGWAGTSFL RNLDNPKYEV HVVSPRNYFA FTPLLPSVTC
101: GTVEARSIVE PVRNIFRKKK MDMQFSEAEC LKIDATNRKV YCRSNISNNL NEKEEFVVDY DYLIIAVGAN VNTFNTPGVM ENCHFLKEVE DAQKIRRTVI
201: DCFERASLPS VSEEEKKRIL HFAIVGGGPT GVEFAASLHD YVTEDLVNIY PGIKDLVKIT LLEAGDHILS MFDKRITAFA EEKFGRDGID VKTGSMVVKV
301: SQKEISTKEM KNGGAITTIP YGMAVWSTGI GTRPFIRDFM SQIGQTNRRA IATDEWLRVE ATNNVYALGD CATINQRKVM EDIAAIFKKA DKDNSGTLTV
401: KEFQEVLADI CERYPQVELY LKSQQMHNIA DLLKGSKEDV EKESIELNIE ELKTILSKVD SQMKFLPATA QVASQQGTYL AKCFNRMEEC EKNPEGPIRF
501: RGEGRHRFKP FRYKHLGQFA PLGGEQTAAQ LPGDWVSIGH SSQWLWYSVY ASKQVSWRTR ALVVSDWTRR FIFGRDSSQI

Best Arabidopsis Sequence Match ( AT4G21490.1 )
(BLAST)

001: MRPFAYFERL SQAFHDYPSL SKILVVSTIS GGGLIVYSEA NPSYSNNGVE TKTRKRKVVL LGTGWAGASF LKTLNNSSYE VQVISPRNYF AFTPLLPSVT
101: CGTVEARSVV EPIRNIARKQ NVEMSFLEAE CFKIDPGSKK VYCRSKQGVN SKGKKEFDVD YDYLVIATGA QSNTFNIPGV EENCHFLKEV EDAQRIRSTV
201: IDSFEKASLP GLNEQERKRM LHFVVVGGGP TGVEFASELH DFVNEDLVKL YPKAKNLVQI TLLEAADHIL TMFDKRITEF AEEKFTRDGI DVKLGSMVVK
301: VNDKEISAKT KAGEVSTIPY GMIVWSTGIG TRPVIKDFMK QIGQGNRRAL ATDEWLRVEG CDNIYALGDC ATINQRKVME DIAAIFKKAD KENSGTLTMK
401: EFHEVMSDIC DRYPQVELYL KSKGMHGITD LLKQAQAENG SNKSVELDIE ELKSALCQVD SQVKLLPATG QVAAQQGTYL AKCFDRMEVC EKNPEGPIRI
501: RGEGRHRFRP FRYRHLGQFA PLGGEQTAAQ LPGDWVSIGH SSQWLWYSVY ASKQVSWRTR VLVVSDWMRR FIFGRDSSRI

Arabidopsis Description

NDB3External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JJJ3]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.