Factsheet for GSMUA_Achr4P33660_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P22940_001	Banana	mitochondrion	75.3	75.3
Os05t0331200-01	Rice	mitochondrion	74.44	74.96
TraesCS3B01G350200.1	Wheat	mitochondrion	72.71	73.86
TraesCS3D01G314700.1	Wheat	mitochondrion	72.54	73.3
TraesCS3A01G316500.1	Wheat	mitochondrion	72.54	73.3
Zm00001d043266_P002	Maize	mitochondrion	73.06	73.18
Zm00001d012615_P001	Maize	mitochondrion	72.88	73.01
VIT_00s2648g00010.t01	Wine grape	mitochondrion, peroxisome, plastid	28.84	72.61
EES01568	Sorghum	mitochondrion	72.19	72.32
Solyc02g079170.2.1	Tomato	nucleus	70.29	69.69
PGSC0003DMT400057712	Potato	mitochondrion	70.29	69.69
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	69.08	69.57
KRH41931	Soybean	mitochondrion	69.08	68.97
HORVU3Hr1G076920.2	Barley	mitochondrion	72.71	68.9
KRH49945	Soybean	mitochondrion	68.91	68.79
CDY44749	Canola	mitochondrion	68.74	68.74
CDY16620	Canola	mitochondrion	68.74	68.74
Bra029549.1-P	Field mustard	mitochondrion	68.74	68.74
KRH10751	Soybean	mitochondrion	67.7	68.06
KRH21576	Soybean	mitochondrion	67.7	68.06
AT4G21490.1	Thale cress	cytosol, mitochondrion, peroxisome	68.05	67.93
KRH25488	Soybean	peroxisome	47.84	67.73
Solyc07g054670.2.1	Tomato	unclear	66.84	67.3
VIT_00s2376g00010.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.7	67.14
CDY38082	Canola	mitochondrion	66.15	66.61
CDX85484	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	66.15	66.61
Bra023586.1-P	Field mustard	mitochondrion	64.42	66.13
CDX78714	Canola	plastid	65.28	65.85
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	57.17	65.81
CDX70722	Canola	plastid	65.11	65.79
Bra006374.1-P	Field mustard	plastid	65.11	65.68
AT2G20800.1	Thale cress	mitochondrion	65.28	64.95
KRH62788	Soybean	cytosol	17.96	64.2
AT4G05020.2	Thale cress	mitochondrion	68.05	63.65
GSMUA_Achr10P...	Banana	mitochondrion	74.27	43.97
GSMUA_Achr7P00100_001	Banana	mitochondrion	25.91	37.13
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	25.04	35.71
GSMUA_Achr5P28430_001	Banana	plastid	30.4	30.56

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G33660_001	EnsemblPlants:GSMUA_Achr4P33660_001
EnsemblPlants:GSMUA_Achr4T33660_001	InterPro:IPR002048	InterPro:IPR036188	UniProt:M0SUC8	PFAM:PF07992	PRINTS:PR00368
PRINTS:PR00469	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	InterPro:Pyridine_nuc-diS_OxRdtase_2
SUPFAM:SSF47473	SUPFAM:SSF51905	UniParc:UPI000295DB75	SEG:seg	:	:

Description

Putative Probable NADH dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr4G33660_001]

Coordinates

chr4:-:30039364..30045872

Molecular Weight (calculated)

65501.6 Da

IEP (calculated)

8.236

GRAVY (calculated)

-0.270

Length

579 amino acids

Sequence
(BLAST)

001: MRFSASFLDR ASQAIRRRPT ISKLIVICAL SSGGVLAYAD AKSDHDFETS ELTRKKKLVV LGTGWAGTSF LRNLDTSQYD VQVVSPRNYF LFTPLLPSVT
101: CGTVEPRSIV EPIRKIMHKK VGGIKFWEAE CYKIDPTNKK VLCCSNIWTN MDGSGEFAVD YDYLVIALGA KPNTFNTPGV VENCHFLKEI EDTQRIRRSV
201: MNCFERASLP ELSEEDRRKN LHFVIVGGGP TGVEFAAELH DFVSEDLAKL YPTVKDLVKI SVIEAGDHIL TMFDKRITEF AEEKFQRDGI DVKTNFRVVK
301: VSDKAITMTS ASSREISVPY GMVVWSTGIG TRPVILDFMK QVGQADRRVL ATDEWLRVPN CDGVYALGDC ATISQRKVME DISAIFRVAD KDDSGTLTVK
401: EIKDVLDDIC ERYPQVELYL KSKQMKDFID LFKDANSNAV KESKELNIEE FKKALADVDS RVKMLPATAQ VAAQQGNYLA KCFNKMKICE ENPEGPLRMR
501: GSGRHRFHPF RYRHFGQFAP LGGEQTAAQL PGDWVSIGHS SQWLWYSVYA SKQVSWRTRF LVVSDWMRRF IHGRDSSCI

Best Arabidopsis Sequence Match ( AT4G21490.1 )
(BLAST)

001: MRPFAYFERL SQAFHDYPSL SKILVVSTIS GGGLIVYSEA NPSYSNNGVE TKTRKRKVVL LGTGWAGASF LKTLNNSSYE VQVISPRNYF AFTPLLPSVT
101: CGTVEARSVV EPIRNIARKQ NVEMSFLEAE CFKIDPGSKK VYCRSKQGVN SKGKKEFDVD YDYLVIATGA QSNTFNIPGV EENCHFLKEV EDAQRIRSTV
201: IDSFEKASLP GLNEQERKRM LHFVVVGGGP TGVEFASELH DFVNEDLVKL YPKAKNLVQI TLLEAADHIL TMFDKRITEF AEEKFTRDGI DVKLGSMVVK
301: VNDKEISAKT KAGEVSTIPY GMIVWSTGIG TRPVIKDFMK QIGQGNRRAL ATDEWLRVEG CDNIYALGDC ATINQRKVME DIAAIFKKAD KENSGTLTMK
401: EFHEVMSDIC DRYPQVELYL KSKGMHGITD LLKQAQAENG SNKSVELDIE ELKSALCQVD SQVKLLPATG QVAAQQGTYL AKCFDRMEVC EKNPEGPIRI
501: RGEGRHRFRP FRYRHLGQFA PLGGEQTAAQ LPGDWVSIGH SSQWLWYSVY ASKQVSWRTR VLVVSDWMRR FIFGRDSSRI

Arabidopsis Description

NDB3External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JJJ3]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.