CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plasma membrane, golgi

Predictor Summary:

plastid 2
mitochondrion 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, secretory
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023586.1-P	Field mustard	mitochondrion	97.22	99.11
CDY38082	Canola	mitochondrion	98.78	98.78
CDX78714	Canola	plastid	93.22	93.38
CDX70722	Canola	plastid	92.52	92.84
AT2G20800.1	Thale cress	mitochondrion	88.87	87.8
KRH25488	Soybean	peroxisome	50.96	71.64
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	68.7	68.7
CDY16620	Canola	mitochondrion	68.52	68.05
CDY44749	Canola	mitochondrion	68.0	67.53
Solyc07g054670.2.1	Tomato	unclear	67.48	67.48
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	58.96	67.4
GSMUA_Achr4P33660_001	Banana	mitochondrion	66.61	66.15
TraesCS7D01G303500.1	Wheat	golgi	64.7	64.58
TraesCS7B01G206900.1	Wheat	mitochondrion	64.52	64.41
TraesCS7A01G306600.1	Wheat	mitochondrion	64.52	64.41
Os05t0331200-01	Rice	mitochondrion	63.48	63.48
EES14522	Sorghum	mitochondrion	64.0	63.34
TraesCS3B01G350200.1	Wheat	mitochondrion	62.61	63.16
GSMUA_Achr3P22940_001	Banana	mitochondrion	63.48	63.04
TraesCS3A01G316500.1	Wheat	mitochondrion	62.78	63.0
TraesCS3D01G314700.1	Wheat	mitochondrion	62.61	62.83
Zm00001d049597_P001	Maize	mitochondrion	64.35	62.5
Zm00001d012615_P001	Maize	mitochondrion	62.43	62.11
EES01568	Sorghum	mitochondrion	62.26	61.94
Zm00001d043266_P002	Maize	mitochondrion	62.26	61.94
CDY29891	Canola	mitochondrion	61.22	61.75
CDY58724	Canola	mitochondrion	61.04	61.58
Os08t0141400-01	Rice	mitochondrion	35.83	57.7
GSMUA_Achr10P...	Banana	mitochondrion	62.43	36.71
CDY70466	Canola	mitochondrion, peroxisome	21.91	36.0
CDY15606	Canola	plastid	29.91	34.06
CDX86494	Canola	mitochondrion, peroxisome	29.91	33.99
CDY10256	Canola	mitochondrion	29.74	33.6
CDY06685	Canola	mitochondrion	29.57	33.4
CDX84870	Canola	mitochondrion	28.87	32.94
Zm00001d004457_P001	Maize	mitochondrion	8.17	29.19

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	GO:A0A078DB18	EnsemblPlants:CDX85484	ProteinID:CDX85484	ProteinID:CDX85484.1
InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00143184001	InterPro:IPR002048	InterPro:IPR036188	PFAM:PF07992	PRINTS:PR00368	PFscan:PS50222
PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	SUPFAM:SSF47473	SUPFAM:SSF51905	UniParc:UPI0004EF2977	SEG:seg

Description

BnaA02g03290D

Coordinates

chrLK031842:-:311563..314371

Molecular Weight (calculated)

64537.3 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.364

Length

575 amino acids

Sequence
(BLAST)

001: MSTRSFCKRA YSFFMAYPSA SKLLLLSTCS GGGLLVYSDS SPSKRTLTAD GQEIKKKKVV VLGSGWSGYS FLSHFNNPNY DVQVVSPRNF FLFTPLLPSV
101: TNGTVEARSI VEPIRGLMRK KGFEYTEAEC VKIDPSNKKI HCKSKDSTSL KGTTEFDMDY DILVIAVGAK PNTFNTPGVE EHAHFLKEAD DALKIRRSVI
201: NCFERASLPD LTEEERKKIL HFVVVGGGPT GVEFSAELHD FLVEDVAKIY PKVQEFTRIT LLEAGDHILN MFDKRITAFA EEKFQRDGID LKTKNMVVGV
301: TADEISTKER GSGEVVSEPY GMVVWSTGIG SRPVIKDFMH QIGQGQRRVL ATDEWLRVDG CDSVYALGDT ATINQRRVME DIAAIFGKAD KGETGTLNKK
401: EFKGVVKDIC QRYPQVELYL KKKKLRNIAN LLKSANGDNT ELSIETFKQA LSEVDTQMKN LPATAQVASQ QGKYLAKCFN KMEKCEKKPE GPLRFRGEGR
501: HRFQPFRYRH FGSFAPLGGE QTAAELPGDW VSIGHSSQWL WYSVYASKLV SWRTRSLVVS DWVRRFIFGR DSSSI

Best Arabidopsis Sequence Match ( AT2G20800.1 )
(BLAST)

001: MSFHSFYQRA SSLFKAYPST SKILLLSTFS GGGGVLVYSD SNPLKRILHA DATLDSDGNP IRKKKVVVLG SGWSGYSFLS YLNNPNYDVQ VVSPRNFFLF
101: TPLLPSVTNG TVEARSIVEP IRGLMRKKGF EYKEAECVKI DASNKKIHCR SKEGSSLKGT TEFDMDYDIL ILAVGAKPNT FNTPGVEEHA YFLKEAEDAL
201: NIRHSVIDCF ERASLPNLTE EERKKILHFV VVGGGPTGVE FSAELHDFLV QDVAKIYPKV QEFTKITLLE AGDHILNMFD KRITAFAEEK FQRDGIDLKT
301: GSMVVGVTAD EISTKERETG KIVSEPYGMV VWSTGIGSRP VIKDFMQQIG QGQRRVLATD EWLRVEGCDG VYALGDTATI NQRRVMEDIA AIFNKADKGN
401: TGTLKKKDFN SVVKDICQRY PQVELYLKKN KLKNIANLLK SANGEDTQVN IEKFKQALSE VDSQMKNLPA TAQVASQQGK YLAKCFNKME KCEKKPEGPL
501: RFRGEGRHRF QPFRYRHFGS FAPLGGEQTA AELPGDWVSI GHSSQWLWYS VYASKLVSWR TRMLVISDWT RRFVFGRDSS SI

Arabidopsis Description

NDB4External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKT7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.