CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

plastid 2
peroxisome 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15606	Canola	plastid	98.02	98.22
Bra030676.1-P	Field mustard	plastid	97.63	97.82
CDY10256	Canola	mitochondrion	90.71	90.18
AT1G07180.1	Thale cress	mitochondrion	90.32	89.61
CDY06685	Canola	mitochondrion	90.12	89.59
CDY70466	Canola	mitochondrion, peroxisome	60.28	87.14
CDX84870	Canola	mitochondrion	83.99	84.33
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	60.87	75.86
VIT_19s0027g01030.t01	Wine grape	cytosol	44.07	75.34
KRH17048	Soybean	mitochondrion	70.16	73.2
KRH72693	Soybean	mitochondrion	70.16	73.2
KRG98274	Soybean	mitochondrion	72.13	72.13
KRH30292	Soybean	mitochondrion	72.33	71.91
Solyc06g007160.2.1	Tomato	plastid	69.76	71.31
PGSC0003DMT400010678	Potato	mitochondrion, peroxisome, plastid	69.57	71.11
VIT_06s0004g06760.t01	Wine grape	plastid	69.76	70.74
HORVU3Hr1G110990.1	Barley	peroxisome	12.85	69.15
Os01t0830100-01	Rice	mitochondrion	62.06	68.86
EES01700	Sorghum	mitochondrion	67.98	68.39
TraesCS3B01G382500.1	Wheat	mitochondrion	67.19	67.86
TraesCS3A01G349900.1	Wheat	mitochondrion	67.0	67.66
TraesCS3D01G343900.1	Wheat	mitochondrion	67.0	67.66
Zm00001d012464_P001	Maize	mitochondrion	67.39	64.95
HORVU3Hr1G087950.4	Barley	endoplasmic reticulum, vacuole	20.55	64.2
HORVU3Hr1G087850.7	Barley	peroxisome	66.21	63.93
HORVU2Hr1G022740.3	Barley	extracellular	17.19	63.5
HORVU2Hr1G101830.2	Barley	extracellular	18.58	59.12
HORVU7Hr1G040660.4	Barley	cytosol	22.13	57.14
HORVU7Hr1G076330.1	Barley	mitochondrion, peroxisome	31.03	56.27
HORVU5Hr1G020920.4	Barley	extracellular	19.37	56.0
HORVU5Hr1G056500.3	Barley	extracellular	18.77	54.29
CDY58724	Canola	mitochondrion	34.19	30.35
CDY29891	Canola	mitochondrion	33.99	30.18
CDY44749	Canola	mitochondrion	34.39	30.05
CDY16620	Canola	mitochondrion	34.39	30.05
CDY38082	Canola	mitochondrion	33.99	29.91
CDX85484	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	33.99	29.91
CDX70722	Canola	plastid	33.6	29.67
CDX78714	Canola	plastid	33.6	29.62

Protein Annotations

EnsemblPlants:CDX86494	EnsemblPlantsGene:GSBRNA2T00145093001	Gene3D:3.50.50.100	GO:A0A078DDT4	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
InterPro:IPR036188	PANTHER:PTHR43706	PANTHER:PTHR43706:SF14	PFAM:PF07992	PRINTS:PR00368	ProteinID:CDX86494
ProteinID:CDX86494.1	SEG:seg	SUPFAM:SSF51905	UniParc:UPI0004EF4394	MapMan:2.4.2.1.1	:

Description

BnaC08g02090D

Coordinates

chrLK031846:-:128956..132053

Molecular Weight (calculated)

56298.0 Da

IEP (calculated)

9.119

GRAVY (calculated)

-0.124

Length

506 amino acids

Sequence
(BLAST)

001: MSWIKNLVKI SPTTSSVGNL FRNHESYTLL SRFCTALQHQ QQQQSQTVQE TEVVQHRYEG LAPTKEGEKP RLLVLGSGWA GCRLMKGIDT SIYDVVCVSP
101: RNHMVFTPLL ASTCVGTLEF RSVAEPISRI QPAISREPGS YYFLANCSRL DSQNHEVHCE TVTDGLSTLK PWKFKIAYDK LVLACGAEAS TFGISGVLEN
201: AIFLREVHHA QEIRRKLLLN LMLSEVPGLG GEEKKRLLHC VVVGGGPTGV EFSGELSDFI MKDVRQRYAH VKDDIRVTLI EARDILSSFD DGLRQYAIKQ
301: LNKSGVKLVR GIVKEVKPQR LILDDGTEVP YGLLVWSTGV GPSSFVRSLD LPKDPGGRIG IDEWMRVPSI QDVFAIGDCS GYLESTGKST LPALAQVAER
401: EGKYLANLLN VMGKAGGGRA FSAKDTELGE PFVYKHLGSM ATIGRYKALV DLRESKQGKG ISMGGFLSFF IWRSAYLTRV VSWRNRFYVF INWITTFVFG
501: RDTSRL

Best Arabidopsis Sequence Match ( AT1G07180.1 )
(BLAST)

001: MLWIKNLARI SQTTSSSVGN VFRNPESYTL SSRFCTALQK QQVTDTVQAK EDVVNALEPQ RYDGLAPTKE GEKPRVLVLG SGWAGCRVLK GIDTSIYDVV
101: CVSPRNHMVF TPLLASTCVG TLEFRSVAEP ISRIQPAISR EPGSYYFLAN CSKLDADNHE VHCETVTEGS STLKPWKFKI AYDKLVLACG AEASTFGING
201: VLENAIFLRE VHHAQEIRRK LLLNLMLSEV PGIGEDEKKR LLHCVVVGGG PTGVEFSGEL SDFIMKDVRQ RYSHVKDDIR VTLIEARDIL SSFDDRLRHY
301: AIKQLNKSGV KLVRGIVKEV KPQKLILDDG TEVPYGPLVW STGVGPSSFV RSLDFPKDPG GRIGIDEWMR VPSVQDVFAI GDCSGYLEST GKSTLPALAQ
401: VAEREGKYLA NLFNVMGKAG GGRANSAKEM ELGEPFVYKH LGSMATIGRY KALVDLRESK EGKGISMAGF LSWFIWRSAY LTRVVSWRNR FYVAINWLTT
501: FVFGRDISRI

Arabidopsis Description

NDA1Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GWA1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.