CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78714	Canola	plastid	98.78	98.61
Bra006374.1-P	Field mustard	plastid	98.43	98.26
CDX85484	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	92.84	92.52
CDY38082	Canola	mitochondrion	92.67	92.35
AT2G20800.1	Thale cress	mitochondrion	89.18	87.8
KRH25488	Soybean	peroxisome	50.96	71.39
CDY16620	Canola	mitochondrion	68.59	67.88
CDY44749	Canola	mitochondrion	68.24	67.53
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	67.71	67.48
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	58.99	67.2
Solyc07g054670.2.1	Tomato	unclear	67.02	66.78
GSMUA_Achr4P33660_001	Banana	mitochondrion	65.79	65.11
TraesCS7B01G206900.1	Wheat	mitochondrion	64.57	64.24
TraesCS7D01G303500.1	Wheat	golgi	64.4	64.06
TraesCS7A01G306600.1	Wheat	mitochondrion	64.22	63.89
EES14522	Sorghum	mitochondrion	64.4	63.51
Os05t0331200-01	Rice	mitochondrion	63.7	63.48
TraesCS3B01G350200.1	Wheat	mitochondrion	62.3	62.63
Zm00001d049597_P001	Maize	mitochondrion	64.57	62.5
TraesCS3A01G316500.1	Wheat	mitochondrion	62.3	62.3
TraesCS3D01G314700.1	Wheat	mitochondrion	62.13	62.13
Zm00001d043266_P002	Maize	mitochondrion	61.95	61.42
Zm00001d012615_P001	Maize	mitochondrion	61.95	61.42
GSMUA_Achr3P22940_001	Banana	mitochondrion	61.95	61.31
EES01568	Sorghum	mitochondrion	61.78	61.25
CDY29891	Canola	mitochondrion	60.91	61.23
CDY58724	Canola	mitochondrion	60.38	60.7
Os08t0141400-01	Rice	mitochondrion	36.47	58.54
GSMUA_Achr10P...	Banana	mitochondrion	61.26	35.89
CDY70466	Canola	mitochondrion, peroxisome	21.82	35.71
CDY15606	Canola	plastid	29.67	33.66
CDX86494	Canola	mitochondrion, peroxisome	29.67	33.6
CDY10256	Canola	mitochondrion	29.49	33.2
CDY06685	Canola	mitochondrion	29.32	33.01
CDX84870	Canola	mitochondrion	28.97	32.94
Zm00001d004457_P001	Maize	mitochondrion	8.2	29.19

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	GO:A0A078C1W6	EnsemblPlants:CDX70722	ProteinID:CDX70722	ProteinID:CDX70722.1
InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00140590001	InterPro:IPR002048	InterPro:IPR036188	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469
PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF47473	SUPFAM:SSF51905
UniParc:UPI0004EE6037	SEG:seg	:	:	:	:

Description

BnaC03g08060D

Coordinates

chrLK031791:+:1723665..1726147

Molecular Weight (calculated)

64346.1 Da

IEP (calculated)

9.564

GRAVY (calculated)

-0.361

Length

573 amino acids

Sequence
(BLAST)

001: MSSHSFSKRA YSFFKTYPSA AKLLLLSTCS GGGLLVYSDS NPPKRTLTAD GQETKKKKVV VLGSGWGGYS FLSYLNNPNY DVQVVSPRNF FLFTPLLPSV
101: TNGTVEARSI VEPIRGLMRK KGFEYTEAEC VKIDASNKKI LCRSKDASKD AKEFNMDYDI LVVAVGAKPN TFNTPGVEEN AHFLKEAEDA LKIRQSVINS
201: FERASLPDLT EEERKKILHF VVVGGGPTGV EFSAELHDFL VEDVAKIYPK VQEFTRITLL EAGDHILNMF DKRITAFAEE KFQRDGIDLK TKNMVVGVTA
301: DEISTKEIAT GKIVSEPYGM VVWSTGIGIR PVIKEFMHQI GQGQRRVLAT DEWLRVEGCD SVYALGDTAT INQRRVMEDI AAIFSKADKG ETGTLNKKEF
401: KSVVKDICQR YPQVELYLKK KKLRNIANLL KSANGDDTKV NIETFKQALS EVDTQMKNLP ATAQVASQQG KYLAKCFNKM EKCEKKPEGP LRFRGEGRHR
501: FQPFRYRHFG SFAPLGGEQT AAELPGDWVS IGHSSQWLWY SVYASKLVSW RTRSLVVSDW VRRFIFGRDS SSI

Best Arabidopsis Sequence Match ( AT2G20800.1 )
(BLAST)

001: MSFHSFYQRA SSLFKAYPST SKILLLSTFS GGGGVLVYSD SNPLKRILHA DATLDSDGNP IRKKKVVVLG SGWSGYSFLS YLNNPNYDVQ VVSPRNFFLF
101: TPLLPSVTNG TVEARSIVEP IRGLMRKKGF EYKEAECVKI DASNKKIHCR SKEGSSLKGT TEFDMDYDIL ILAVGAKPNT FNTPGVEEHA YFLKEAEDAL
201: NIRHSVIDCF ERASLPNLTE EERKKILHFV VVGGGPTGVE FSAELHDFLV QDVAKIYPKV QEFTKITLLE AGDHILNMFD KRITAFAEEK FQRDGIDLKT
301: GSMVVGVTAD EISTKERETG KIVSEPYGMV VWSTGIGSRP VIKDFMQQIG QGQRRVLATD EWLRVEGCDG VYALGDTATI NQRRVMEDIA AIFNKADKGN
401: TGTLKKKDFN SVVKDICQRY PQVELYLKKN KLKNIANLLK SANGEDTQVN IEKFKQALSE VDSQMKNLPA TAQVASQQGK YLAKCFNKME KCEKKPEGPL
501: RFRGEGRHRF QPFRYRHFGS FAPLGGEQTA AELPGDWVSI GHSSQWLWYS VYASKLVSWR TRMLVISDWT RRFVFGRDSS SI

Arabidopsis Description

NDB4External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKT7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.