CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024217.1-P	Field mustard	mitochondrion	99.47	99.47
CDY58724	Canola	mitochondrion	99.47	99.47
AT4G28220.1	Thale cress	mitochondrion	89.47	89.32
PGSC0003DMT400047210	Potato	cytosol	37.89	70.13
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	70.88	70.02
PGSC0003DMT400055796	Potato	mitochondrion	70.53	69.67
Solyc10g008630.2.1	Tomato	mitochondrion	70.35	69.5
KRH25490	Soybean	mitochondrion	69.65	69.28
Solyc07g054640.1.1	Tomato	mitochondrion	68.6	68.0
CDY16620	Canola	mitochondrion	64.04	63.04
CDY44749	Canola	mitochondrion	63.51	62.52
CDY38082	Canola	mitochondrion	61.75	61.22
CDX85484	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	61.75	61.22
CDX70722	Canola	plastid	61.23	60.91
CDX78714	Canola	plastid	61.23	60.8
KRH26903	Soybean	mitochondrion	22.46	54.24
KRH56037	Soybean	extracellular, plasma membrane	31.75	53.71
CDY70466	Canola	mitochondrion, peroxisome	22.46	36.57
CDX86494	Canola	mitochondrion, peroxisome	30.18	33.99
CDY15606	Canola	plastid	29.82	33.66
CDY10256	Canola	mitochondrion	30.0	33.6
CDX84870	Canola	mitochondrion	29.65	33.53
CDY06685	Canola	mitochondrion	29.65	33.2

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	GO:A0A078GWI2	UniProt:A0A078GWI2	EnsemblPlants:CDY29891	ProteinID:CDY29891
ProteinID:CDY29891.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00044343001	InterPro:IPR002048	InterPro:IPR036188	PFAM:PF07992
PRINTS:PR00368	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	SMART:SM00054
SUPFAM:SSF47473	SUPFAM:SSF51905	UniParc:UPI0004EEDA05	SEG:seg	:	:

Description

BnaA03g49120DBnaA03g49120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWI2]

Coordinates

chrLK032245:+:357544..360759

Molecular Weight (calculated)

63210.5 Da

IEP (calculated)

6.591

GRAVY (calculated)

-0.254

Length

570 amino acids

Sequence
(BLAST)

001: MTILSSLGRA SRSAPLASKL LLLGTLSGGS LVAYSDSNKK EEEQKQKKKK VVVLGTGWAG ISFLKDLDIS SYDVQVVSPQ NYFAFTPLLP SVTCGTVEAR
101: SIVESVRNIT KKKNGEIELW EADCVKIDPA NNKVLCQPVF KDDPEASQEF SLEYDYLIIA VGAQVNTFGT PGVLENCHFL KEVEDAQRIR RGVIDCFEKA
201: VLPGLTEEQR RTKLHFVIVG GGPTGVEFAA ELHDFIEEDI TKIYPSVKEL VKITLIQSGD HILNSFDERI SSFAEQKFLR DGIDVLMGMR VMSVSDKDIS
301: VKIKSSGEVV SLPHGLILWS TGVGTRPVIS DLMEQVGQGG RRVLATNEWL QVKGCENVYA VGDCASIAQR KIMGDIANIF KAADVDNSGT LTEEELQDVV
401: EDINVRYPQV ELYLKSKHVR SIKDLLTDSE GNPKKEVDIK AFESALSGVD SQMKSLPATA QVAAQQGSYL AKCFNKMEHC KEHPEGPKRF RTGGHHQFRP
501: FQYKHFGQFA PLGGDQAAAE LPGDWVSAGR STQWLWYSVY ASKQVSWRTR ALVVSDWTRR YIFGRDSSRI

Best Arabidopsis Sequence Match ( AT4G28220.1 )
(BLAST)

001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

Arabidopsis Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q1JPL4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.