Factsheet for Bra024217.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29891	Canola	mitochondrion	99.47	99.47
AT4G28220.1	Thale cress	mitochondrion	89.3	89.14
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	70.88	70.02
PGSC0003DMT400047210	Potato	cytosol	37.54	69.48
PGSC0003DMT400055796	Potato	mitochondrion	70.0	69.15
Solyc10g008630.2.1	Tomato	mitochondrion	70.0	69.15
KRH25490	Soybean	mitochondrion	69.47	69.11
Solyc07g054640.1.1	Tomato	mitochondrion	68.42	67.83
Bra029549.1-P	Field mustard	mitochondrion	64.21	63.21
Bra023586.1-P	Field mustard	mitochondrion	60.18	60.82
Bra006374.1-P	Field mustard	plastid	61.23	60.8
KRH26903	Soybean	mitochondrion	22.46	54.24
KRH56037	Soybean	extracellular, plasma membrane	31.58	53.41
Bra030676.1-P	Field mustard	plastid	29.82	33.66
Bra022768.1-P	Field mustard	mitochondrion	29.65	33.53
Bra015560.1-P	Field mustard	mitochondrion	29.82	33.4

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	EnsemblPlantsGene:Bra024217	EnsemblPlants:Bra024217.1	EnsemblPlants:Bra024217.1-P	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491
GO:GO:0031314	GO:GO:0055114	InterPro:IPR002048	InterPro:IPR036188	UniProt:M4E613	PFAM:PF07992
PRINTS:PR00368	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	SUPFAM:SSF47473
SUPFAM:SSF51905	UniParc:UPI0002540BB8	SEG:seg	:	:	:

Description

AT4G28220 (E=3e-279) NDB1 | NDB1 (NAD(P)H dehydrogenase B1); NADH dehydrogenase/ disulfide oxidoreductase

Coordinates

chrA03:+:26829139..26832045

Molecular Weight (calculated)

63181.4 Da

IEP (calculated)

6.737

GRAVY (calculated)

-0.254

Length

570 amino acids

Sequence
(BLAST)

001: MTILSSLGRA SRSAPLASKL LLLGTLSGGS LVAYSDSNKK EEEQKQKKKK VVVLGTGWAG ISFLKDLDIS SYDVQVVSPQ NYFAFTPLLP SVTCGTVEAR
101: SIVESVRNIT KKKNGEIELW EADCVKIDPA NNKVLCQPVF KDDPEASQEF SLEYDYLIIA VGAQVNTFGT PGVLENCHFL KEVEDAQRIR RGVIDCFEKA
201: VLPGLTEEQR RTKLHFVIVG GGPTGVEFAA ELHDFIEEDI TKIYPSVKEL VKITLIQSGD HILNSFDERI SSFAEQKFLR DGIDVLMGMR VMSVSNKDIS
301: VKIKSSGEVV SLPHGLILWS TGVGTRPVIS DLMEQVGQGG RRVLATNEWL QVKGCENVYA VGDCASIAQR KIMGDIANIF KAADVDNSGT LTEDELQDVV
401: DDINVRYPQV ELYLKSKHVR SIKDLLTDSE GNPKKEVDIK AFESALSGVD SQMKSLPATA QVAAQQGSYL AKCFNKMEHC KEHPEGPKRF RTGGHHQFRP
501: FQYKHFGQFA PLGGDQAAAE LPGDWVSAGR STQWLWYSVY ASKQVSWRTR ALVVSDWTRR YIFGRDSSRI

Best Arabidopsis Sequence Match ( AT4G28220.1 )
(BLAST)

001: MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA
101: RSIVESVRNI TKKKNGEIEL WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF LKEVEDAQRI RRGVIDCFEK
201: AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI
301: TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV
401: VDDIIVRYPQ VELYLKSKHM RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ CKELPEGPKR FRTGGHHQFR
501: PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

Arabidopsis Description

NDB1External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q1JPL4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.