Factsheet for Bra023586.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85484	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	99.11	97.22
CDY38082	Canola	mitochondrion	98.94	97.04
Bra006374.1-P	Field mustard	plastid	93.26	91.64
AT2G20800.1	Thale cress	mitochondrion	89.18	86.43
KRH25488	Soybean	peroxisome	50.53	69.68
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	68.62	67.3
Bra029549.1-P	Field mustard	mitochondrion	68.44	66.67
Solyc07g054670.2.1	Tomato	unclear	67.38	66.09
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	58.51	65.61
GSMUA_Achr4P33660_001	Banana	mitochondrion	66.13	64.42
TraesCS7D01G303500.1	Wheat	golgi	64.72	63.37
TraesCS7B01G206900.1	Wheat	mitochondrion	64.54	63.19
TraesCS7A01G306600.1	Wheat	mitochondrion	64.54	63.19
EES14522	Sorghum	mitochondrion	64.01	62.13
TraesCS3B01G350200.1	Wheat	mitochondrion	62.77	62.11
Os05t0331200-01	Rice	mitochondrion	63.3	62.09
TraesCS3A01G316500.1	Wheat	mitochondrion	62.94	61.95
TraesCS3D01G314700.1	Wheat	mitochondrion	62.77	61.78
GSMUA_Achr3P22940_001	Banana	mitochondrion	63.12	61.49
Zm00001d049597_P001	Maize	mitochondrion	64.36	61.32
Zm00001d012615_P001	Maize	mitochondrion	62.23	60.73
Zm00001d043266_P002	Maize	mitochondrion	62.23	60.73
EES01568	Sorghum	mitochondrion	62.06	60.55
Bra024217.1-P	Field mustard	mitochondrion	60.82	60.18
Os08t0141400-01	Rice	mitochondrion	36.17	57.14
GSMUA_Achr10P...	Banana	mitochondrion	62.06	35.79
Bra030676.1-P	Field mustard	plastid	30.5	34.06
Bra015560.1-P	Field mustard	mitochondrion	30.32	33.6
Bra022768.1-P	Field mustard	mitochondrion	29.61	33.13
Zm00001d004457_P001	Maize	mitochondrion	8.33	29.19

Protein Annotations

EnsemblPlants:Bra023586.1	EnsemblPlants:Bra023586.1-P	EnsemblPlantsGene:Bra023586	Gene3D:3.50.50.100	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
InterPro:IPR036188	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3	PFAM:PF07992	PRINTS:PR00368	SEG:seg
SUPFAM:SSF51905	UniParc:UPI0002543059	UniProt:M4E483	MapMan:2.4.2.1.2	:	:

Description

AT2G20800 (E=1e-285) NDB4 | NDB4 (NAD(P)H dehydrogenase B4); NADH dehydrogenase

Coordinates

chrA02:+:4073739..4076539

Molecular Weight (calculated)

63327.9 Da

IEP (calculated)

9.531

GRAVY (calculated)

-0.379

Length

564 amino acids

Sequence
(BLAST)

001: MSTRSFCKRA YSFFKAYPSA SKLLLLSTCS GGGLLVYSDS SPSKRTLTAD GQEIKKKKVV VLGSGWSGYS FLSHFNNPNY DVQVVSPRNF FLFTPLLPSV
101: TNGTVEARSI VEPIRGLMRK KGFEYTEAEC VKIDPSNKKI HCKSKDSTSL KGTTEFDMDY DILVVAVGAK PNTFNTPGVE EHAHFLKEAD DALKIRRSVI
201: NCFERASLPD LTEEERKKIL HFVVVGGGPT GVEFSAELHD FLVEDVAKIY PKVQEFTRIT LLEAGDHILN MFDKRITAFA EEKVQRDGID LKTKSMVVGV
301: TADEISTKER GSGEVVSEPY GMVVWSTGIG SRPVIKDFMH QIGQGQRRVL ATDEWLRVEG CDSVYALGDT ATINQRRVMK GETGTLNKKE FKGVVKDICQ
401: RYPQVELYLK KKKLRNIANL LKSANGDNTE LSIETFKQAL SEVDTQMKNL PATAQVASQQ GKYLAKCFNK MEKCEKKPEG PLRFRGEGRH RFQPFRYRHF
501: GSFAPLGGEQ TAAELPGDWV SIGHSSQWLW YSVYASKLVS WRTRSLVVSD WVRRFIFGRD SSSI

Best Arabidopsis Sequence Match ( AT2G20800.1 )
(BLAST)

001: MSFHSFYQRA SSLFKAYPST SKILLLSTFS GGGGVLVYSD SNPLKRILHA DATLDSDGNP IRKKKVVVLG SGWSGYSFLS YLNNPNYDVQ VVSPRNFFLF
101: TPLLPSVTNG TVEARSIVEP IRGLMRKKGF EYKEAECVKI DASNKKIHCR SKEGSSLKGT TEFDMDYDIL ILAVGAKPNT FNTPGVEEHA YFLKEAEDAL
201: NIRHSVIDCF ERASLPNLTE EERKKILHFV VVGGGPTGVE FSAELHDFLV QDVAKIYPKV QEFTKITLLE AGDHILNMFD KRITAFAEEK FQRDGIDLKT
301: GSMVVGVTAD EISTKERETG KIVSEPYGMV VWSTGIGSRP VIKDFMQQIG QGQRRVLATD EWLRVEGCDG VYALGDTATI NQRRVMEDIA AIFNKADKGN
401: TGTLKKKDFN SVVKDICQRY PQVELYLKKN KLKNIANLLK SANGEDTQVN IEKFKQALSE VDSQMKNLPA TAQVASQQGK YLAKCFNKME KCEKKPEGPL
501: RFRGEGRHRF QPFRYRHFGS FAPLGGEQTA AELPGDWVSI GHSSQWLWYS VYASKLVSWR TRMLVISDWT RRFVFGRDSS SI

Arabidopsis Description

NDB4External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKT7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.