Factsheet for Solyc07g054670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 2
mitochondrion 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	75.83	75.83
KRH25488	Soybean	peroxisome	52.17	73.35
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	63.13	72.17
Solyc02g079170.2.1	Tomato	nucleus	70.78	69.69
CDY38082	Canola	mitochondrion	67.83	67.83
CDX85484	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	67.48	67.48
Bra023586.1-P	Field mustard	mitochondrion	66.09	67.38
AT2G20800.1	Thale cress	mitochondrion	68.17	67.35
Bra006374.1-P	Field mustard	plastid	67.13	67.25
CDX78714	Canola	plastid	66.96	67.07
CDX70722	Canola	plastid	66.78	67.02
GSMUA_Achr4P33660_001	Banana	mitochondrion	67.3	66.84
TraesCS7B01G206900.1	Wheat	mitochondrion	65.74	65.62
TraesCS7A01G306600.1	Wheat	mitochondrion	65.74	65.62
Os05t0331200-01	Rice	mitochondrion	65.57	65.57
TraesCS7D01G303500.1	Wheat	golgi	65.57	65.45
GSMUA_Achr3P22940_001	Banana	mitochondrion	65.57	65.11
TraesCS3B01G350200.1	Wheat	mitochondrion	64.52	65.09
Zm00001d043266_P002	Maize	mitochondrion	65.04	64.71
EES01568	Sorghum	mitochondrion	65.04	64.71
Zm00001d012615_P001	Maize	mitochondrion	64.87	64.53
TraesCS3A01G316500.1	Wheat	mitochondrion	64.17	64.4
TraesCS3D01G314700.1	Wheat	mitochondrion	64.17	64.4
EES14522	Sorghum	mitochondrion	63.83	63.17
Solyc10g008630.2.1	Tomato	mitochondrion	62.78	62.56
Solyc07g054640.1.1	Tomato	mitochondrion	62.26	62.26
Zm00001d049597_P001	Maize	mitochondrion	62.96	61.15
Os08t0141400-01	Rice	mitochondrion	37.39	60.22
GSMUA_Achr10P...	Banana	mitochondrion	64.17	37.73
Solyc06g007160.2.1	Tomato	plastid	30.43	35.35
Solyc02g078900.2.1	Tomato	plastid	29.91	31.44
Zm00001d004457_P001	Maize	mitochondrion	8.35	29.81

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536
GO:GO:0016020	GO:GO:0016491	GO:GO:0031314	GO:GO:0055114	InterPro:IPR002048	InterPro:IPR036188
UniProt:K4CG09	PFAM:PF07992	PRINTS:PR00368	PFscan:PS50222	PANTHER:PTHR43706	PANTHER:PTHR43706:SF3
SUPFAM:SSF47473	SUPFAM:SSF51905	EnsemblPlantsGene:Solyc07g054670.2	EnsemblPlants:Solyc07g054670.2.1	UniParc:UPI000276C5FA	SEG:seg

Description

No Description!

Coordinates

chr7:+:62920060..62923929

Molecular Weight (calculated)

64551.7 Da

IEP (calculated)

8.786

GRAVY (calculated)

-0.213

Length

575 amino acids

Sequence
(BLAST)

001: MSGYSFFQRA SRAFNDYPHL PKLLVLFTVS GGGLATVCHT AFADAGQDDI IKKKKKIVVL GTGWAGTSFL KNLKDPSYSV QVVSPRNYFA FTPLLPSVTC
101: GTVEARSIVE PIRNIVKKKN FDAEFKEAEC YKIDTVNKKV HCKTTQPIHL GGGIEDFTVD YDYLVIAMGA RANTFNTPGV VENAHFLKEV EDALRIRRTV
201: IDCFEKASLP SISEAEKKRI LHFVIVGGGP AGVEFAAELH DFVKEDLAKL YPALKEYVSI TLLEAGDNIL NMFDKRITAF AEEKFARDGI ELKTGSMVVK
301: VSDREISTKE RSTGQTVIIP YGMCVWATGI GSRPVVMDFM KQIGQTNRRI LATDEWLRVE GCKDIYALGD CATVNQRSVM EDISIIFSKA DKNNSGNLRV
401: EDFKEVIQDI CERYPQVELY LKKKQLKNFN ALLKGSEEVA EINIEKFKKL LAEVDSQMKN LPATAQVAAQ QGSYLADCFN RLQICEANPE GPLRFRGTGR
501: HRFHPFRYRH LGQFAPLGGE QTAAQLPGDW VSIGHSTQWL WYSVYASKLV SWRTRVLVVS DWIRRSTFGR DSSRI

Best Arabidopsis Sequence Match ( AT4G21490.1 )
(BLAST)

001: MRPFAYFERL SQAFHDYPSL SKILVVSTIS GGGLIVYSEA NPSYSNNGVE TKTRKRKVVL LGTGWAGASF LKTLNNSSYE VQVISPRNYF AFTPLLPSVT
101: CGTVEARSVV EPIRNIARKQ NVEMSFLEAE CFKIDPGSKK VYCRSKQGVN SKGKKEFDVD YDYLVIATGA QSNTFNIPGV EENCHFLKEV EDAQRIRSTV
201: IDSFEKASLP GLNEQERKRM LHFVVVGGGP TGVEFASELH DFVNEDLVKL YPKAKNLVQI TLLEAADHIL TMFDKRITEF AEEKFTRDGI DVKLGSMVVK
301: VNDKEISAKT KAGEVSTIPY GMIVWSTGIG TRPVIKDFMK QIGQGNRRAL ATDEWLRVEG CDNIYALGDC ATINQRKVME DIAAIFKKAD KENSGTLTMK
401: EFHEVMSDIC DRYPQVELYL KSKGMHGITD LLKQAQAENG SNKSVELDIE ELKSALCQVD SQVKLLPATG QVAAQQGTYL AKCFDRMEVC EKNPEGPIRI
501: RGEGRHRFRP FRYRHLGQFA PLGGEQTAAQ LPGDWVSIGH SSQWLWYSVY ASKQVSWRTR VLVVSDWMRR FIFGRDSSRI

Arabidopsis Description

NDB3External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JJJ3]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.