Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 8
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 unclear: 26455813 |
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400057603 | Potato | mitochondrion | 97.81 | 97.81 |
GSMUA_Achr7P00100_001 | Banana | mitochondrion | 59.05 | 79.95 |
VIT_00s0301g00090.t01 | Wine grape | mitochondrion | 75.5 | 75.64 |
KRH49960 | Soybean | mitochondrion | 72.58 | 72.18 |
KRH41912 | Soybean | mitochondrion | 72.21 | 71.82 |
Solyc06g007160.2.1 | Tomato | plastid | 60.33 | 66.67 |
GSMUA_Achr5P28430_001 | Banana | plastid | 69.1 | 65.62 |
TraesCS2A01G203200.1 | Wheat | plastid | 66.73 | 65.18 |
TraesCS2D01G212500.1 | Wheat | plastid | 66.73 | 65.18 |
TraesCS2B01G230300.1 | Wheat | plastid | 66.54 | 65.0 |
HORVU2Hr1G040130.1 | Barley | peroxisome | 59.05 | 64.73 |
Os07t0564500-01 | Rice | mitochondrion | 66.36 | 64.59 |
EER97387 | Sorghum | mitochondrion | 65.27 | 63.07 |
Zm00001d021804_P001 | Maize | mitochondrion | 58.87 | 53.22 |
Solyc02g079170.2.1 | Tomato | nucleus | 32.72 | 30.65 |
Solyc07g054640.1.1 | Tomato | mitochondrion | 32.18 | 30.61 |
Solyc10g008630.2.1 | Tomato | mitochondrion | 31.99 | 30.33 |
Solyc07g054670.2.1 | Tomato | unclear | 31.44 | 29.91 |
Protein Annotations
EnsemblPlants:Solyc02g078900.2.1 | EnsemblPlantsGene:Solyc02g078900.2 | Gene3D:3.50.50.100 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:FAD/NAD-bd_sf | InterPro:FAD/NAD-binding_dom | InterPro:IPR036188 |
PANTHER:PTHR43706 | PANTHER:PTHR43706:SF4 | PFAM:PF07992 | PRINTS:PR00368 | SEG:seg | SUPFAM:SSF51905 |
UniParc:UPI00027684AC | UniProt:K4B9B4 | MapMan:2.4.2.1.1 | : | : | : |
Description
No Description!
Coordinates
chr2:-:43530542..43535555
Molecular Weight (calculated)
60179.4 Da
IEP (calculated)
9.050
GRAVY (calculated)
-0.119
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVRAARSS FRRSGGAIGN YASERNIFCE GISPFRHPAP VFEKAVTGFN SSYIPSTQMI NQLSFGNRGM KFTPQYQFPH AAAETVGGAD SKNERSSYPG
101: LEATKQGEKP RVVVLGSGWA ACRFLKGIDT SMYDVVCIAP RNHMVFTPLL ASTCVGTLEF RSVAEPVTQI QKALAKDPNS YFFLASCTGV DADKHEVYCE
201: TVGDRGVSHE HYRFKVAYDK LVIASGAEPL TFGIKGVEEH AFFLREVQNA QEIRKKLLMN LMVSETPGIS EEEKERLLHC VVIGGGPTGV EFSGELSDFI
301: MRDVRERYAH VKNYIHVTLI EANEILSSFD VGLREYATKH LTKVGVRLVH GVVKEVHPDK IVLSDGSDVP YGLLVWSTGV GPSNFVKSLN VPKSPGGRIG
401: IDEWLRVPSV EDVFAIGDCA GFLEQTGKPV LPALAQVAER QGKYLVKLFT DIGKQNGGKA LSAKDITLGD PFVYKHLGSM ATVGRYKALV DLRQAKGEKG
501: VSLAGFTSWL IWRSAYLTRV ISWRNRFYVA MNWGTTLIFG RDNTKIG
101: LEATKQGEKP RVVVLGSGWA ACRFLKGIDT SMYDVVCIAP RNHMVFTPLL ASTCVGTLEF RSVAEPVTQI QKALAKDPNS YFFLASCTGV DADKHEVYCE
201: TVGDRGVSHE HYRFKVAYDK LVIASGAEPL TFGIKGVEEH AFFLREVQNA QEIRKKLLMN LMVSETPGIS EEEKERLLHC VVIGGGPTGV EFSGELSDFI
301: MRDVRERYAH VKNYIHVTLI EANEILSSFD VGLREYATKH LTKVGVRLVH GVVKEVHPDK IVLSDGSDVP YGLLVWSTGV GPSNFVKSLN VPKSPGGRIG
401: IDEWLRVPSV EDVFAIGDCA GFLEQTGKPV LPALAQVAER QGKYLVKLFT DIGKQNGGKA LSAKDITLGD PFVYKHLGSM ATVGRYKALV DLRQAKGEKG
501: VSLAGFTSWL IWRSAYLTRV ISWRNRFYVA MNWGTTLIFG RDNTKIG
001: MFMIKNLTRI SPNTSSIITR FRNSGSSSLS YTLASRFCTA QETQIQSPAK IPNDVDRSQY SGLPPTREGE KPRVVVLGSG WAGCRLMKGI DTNLYDVVCV
101: SPRNHMVFTP LLASTCVGTL EFRSVAEPIS RIQPAISREP GSFFFLANCS RLDADAHEVH CETLTDGLNT LKPWKFKIAY DKLVIASGAE ASTFGIHGVM
201: ENAIFLREVH HAQEIRRKLL LNLMLSDTPG ISKEEKRRLL HCVVVGGGPT GVEFSGELSD FIMKDVRQRY AHVKDDIHVT LIEARDILSS FDDRLRRYAI
301: KQLNKSGVRF VRGIVKDVQS QKLILDDGTE VPYGLLVWST GVGPSPFVRS LGLPKDPTGR IGIDEWMRVP SVQDVFAIGD CSGYLETTGK PTLPALAQVA
401: EREGKYLANL LNAIGKGNGG RANSAKEIEL GVPFVYKHLG SMATIGRYKA LVDLRESKDA KGISMTGFVS WFIWRSAYLT RVISWRNRFY VAINWFTTFV
501: FGRDISRI
101: SPRNHMVFTP LLASTCVGTL EFRSVAEPIS RIQPAISREP GSFFFLANCS RLDADAHEVH CETLTDGLNT LKPWKFKIAY DKLVIASGAE ASTFGIHGVM
201: ENAIFLREVH HAQEIRRKLL LNLMLSDTPG ISKEEKRRLL HCVVVGGGPT GVEFSGELSD FIMKDVRQRY AHVKDDIHVT LIEARDILSS FDDRLRRYAI
301: KQLNKSGVRF VRGIVKDVQS QKLILDDGTE VPYGLLVWST GVGPSPFVRS LGLPKDPTGR IGIDEWMRVP SVQDVFAIGD CSGYLETTGK PTLPALAQVA
401: EREGKYLANL LNAIGKGNGG RANSAKEIEL GVPFVYKHLG SMATIGRYKA LVDLRESKDA KGISMTGFVS WFIWRSAYLT RVISWRNRFY VAINWFTTFV
501: FGRDISRI
Arabidopsis Description
NDA2Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80874]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.