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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 8
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
plastid: 20363867
plastid: 22908117
unclear: 26455813
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400057603 Potato mitochondrion 97.81 97.81
GSMUA_Achr7P00100_001 Banana mitochondrion 59.05 79.95
VIT_00s0301g00090.t01 Wine grape mitochondrion 75.5 75.64
KRH49960 Soybean mitochondrion 72.58 72.18
KRH41912 Soybean mitochondrion 72.21 71.82
Solyc06g007160.2.1 Tomato plastid 60.33 66.67
GSMUA_Achr5P28430_001 Banana plastid 69.1 65.62
TraesCS2A01G203200.1 Wheat plastid 66.73 65.18
TraesCS2D01G212500.1 Wheat plastid 66.73 65.18
TraesCS2B01G230300.1 Wheat plastid 66.54 65.0
HORVU2Hr1G040130.1 Barley peroxisome 59.05 64.73
Os07t0564500-01 Rice mitochondrion 66.36 64.59
EER97387 Sorghum mitochondrion 65.27 63.07
Zm00001d021804_P001 Maize mitochondrion 58.87 53.22
Solyc02g079170.2.1 Tomato nucleus 32.72 30.65
Solyc07g054640.1.1 Tomato mitochondrion 32.18 30.61
Solyc10g008630.2.1 Tomato mitochondrion 31.99 30.33
Solyc07g054670.2.1 Tomato unclear 31.44 29.91
Protein Annotations
EnsemblPlants:Solyc02g078900.2.1EnsemblPlantsGene:Solyc02g078900.2Gene3D:3.50.50.100GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016491GO:GO:0055114InterPro:FAD/NAD-bd_sfInterPro:FAD/NAD-binding_domInterPro:IPR036188
PANTHER:PTHR43706PANTHER:PTHR43706:SF4PFAM:PF07992PRINTS:PR00368SEG:segSUPFAM:SSF51905
UniParc:UPI00027684ACUniProt:K4B9B4MapMan:2.4.2.1.1:::
Description
No Description!
Coordinates
chr2:-:43530542..43535555
Molecular Weight (calculated)
60179.4 Da
IEP (calculated)
9.050
GRAVY (calculated)
-0.119
Length
547 amino acids
Sequence
(BLAST)
001: MALVRAARSS FRRSGGAIGN YASERNIFCE GISPFRHPAP VFEKAVTGFN SSYIPSTQMI NQLSFGNRGM KFTPQYQFPH AAAETVGGAD SKNERSSYPG
101: LEATKQGEKP RVVVLGSGWA ACRFLKGIDT SMYDVVCIAP RNHMVFTPLL ASTCVGTLEF RSVAEPVTQI QKALAKDPNS YFFLASCTGV DADKHEVYCE
201: TVGDRGVSHE HYRFKVAYDK LVIASGAEPL TFGIKGVEEH AFFLREVQNA QEIRKKLLMN LMVSETPGIS EEEKERLLHC VVIGGGPTGV EFSGELSDFI
301: MRDVRERYAH VKNYIHVTLI EANEILSSFD VGLREYATKH LTKVGVRLVH GVVKEVHPDK IVLSDGSDVP YGLLVWSTGV GPSNFVKSLN VPKSPGGRIG
401: IDEWLRVPSV EDVFAIGDCA GFLEQTGKPV LPALAQVAER QGKYLVKLFT DIGKQNGGKA LSAKDITLGD PFVYKHLGSM ATVGRYKALV DLRQAKGEKG
501: VSLAGFTSWL IWRSAYLTRV ISWRNRFYVA MNWGTTLIFG RDNTKIG
Best Arabidopsis Sequence Match ( AT2G29990.1 )
(BLAST)
001: MFMIKNLTRI SPNTSSIITR FRNSGSSSLS YTLASRFCTA QETQIQSPAK IPNDVDRSQY SGLPPTREGE KPRVVVLGSG WAGCRLMKGI DTNLYDVVCV
101: SPRNHMVFTP LLASTCVGTL EFRSVAEPIS RIQPAISREP GSFFFLANCS RLDADAHEVH CETLTDGLNT LKPWKFKIAY DKLVIASGAE ASTFGIHGVM
201: ENAIFLREVH HAQEIRRKLL LNLMLSDTPG ISKEEKRRLL HCVVVGGGPT GVEFSGELSD FIMKDVRQRY AHVKDDIHVT LIEARDILSS FDDRLRRYAI
301: KQLNKSGVRF VRGIVKDVQS QKLILDDGTE VPYGLLVWST GVGPSPFVRS LGLPKDPTGR IGIDEWMRVP SVQDVFAIGD CSGYLETTGK PTLPALAQVA
401: EREGKYLANL LNAIGKGNGG RANSAKEIEL GVPFVYKHLG SMATIGRYKA LVDLRESKDA KGISMTGFVS WFIWRSAYLT RVISWRNRFY VAINWFTTFV
501: FGRDISRI
Arabidopsis Description
NDA2Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80874]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.