Factsheet for Solyc06g007160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
peroxisome 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010678	Potato	mitochondrion, peroxisome, plastid	97.98	97.98
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	64.85	79.06
CDY70466	Canola	mitochondrion, peroxisome	54.55	77.14
VIT_19s0027g01030.t01	Wine grape	cytosol	45.05	75.34
KRH17048	Soybean	mitochondrion	73.13	74.64
KRH72693	Soybean	mitochondrion	72.32	73.81
KRG98274	Soybean	mitochondrion	74.95	73.32
KRH30292	Soybean	mitochondrion	75.35	73.28
VIT_06s0004g06760.t01	Wine grape	plastid	72.93	72.34
Bra022768.1-P	Field mustard	mitochondrion	72.12	70.83
CDX84870	Canola	mitochondrion	72.12	70.83
EES01700	Sorghum	mitochondrion	71.92	70.78
AT2G29990.1	Thale cress	mitochondrion	72.53	70.67
CDY15606	Canola	plastid	71.72	70.3
Bra030676.1-P	Field mustard	plastid	71.72	70.3
Os01t0830100-01	Rice	mitochondrion	64.65	70.18
AT1G07180.1	Thale cress	mitochondrion	72.12	70.0
CDY10256	Canola	mitochondrion	71.92	69.94
CDX86494	Canola	mitochondrion, peroxisome	71.31	69.76
TraesCS3B01G382500.1	Wheat	mitochondrion	70.3	69.46
Bra015560.1-P	Field mustard	mitochondrion	71.31	69.35
TraesCS3D01G343900.1	Wheat	mitochondrion	70.1	69.26
TraesCS3A01G349900.1	Wheat	mitochondrion	70.1	69.26
HORVU3Hr1G110990.1	Barley	peroxisome	13.13	69.15
CDY06685	Canola	mitochondrion	70.91	68.96
Zm00001d012464_P001	Maize	mitochondrion	71.52	67.43
HORVU2Hr1G022740.3	Barley	extracellular	18.18	65.69
HORVU3Hr1G087950.4	Barley	endoplasmic reticulum, vacuole	21.41	65.43
HORVU3Hr1G087850.7	Barley	peroxisome	69.09	65.27
HORVU2Hr1G101830.2	Barley	extracellular	19.8	61.64
Solyc02g078900.2.1	Tomato	plastid	66.67	60.33
HORVU7Hr1G040660.4	Barley	cytosol	22.42	56.63
HORVU7Hr1G076330.1	Barley	mitochondrion, peroxisome	31.92	56.63
HORVU5Hr1G020920.4	Barley	extracellular	19.6	55.43
HORVU5Hr1G056500.3	Barley	extracellular	19.19	54.29
Solyc07g054640.1.1	Tomato	mitochondrion	37.17	32.0
Solyc10g008630.2.1	Tomato	mitochondrion	36.97	31.72
Solyc02g079170.2.1	Tomato	nucleus	35.96	30.48
Solyc07g054670.2.1	Tomato	unclear	35.35	30.43

Protein Annotations

EnsemblPlants:Solyc06g007160.2.1	EnsemblPlantsGene:Solyc06g007160.2	Gene3D:3.50.50.100	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:IPR036188
PANTHER:PTHR43706	PANTHER:PTHR43706:SF14	PFAM:PF07992	PRINTS:PR00368	SUPFAM:SSF51905	UniParc:UPI00027660FE
UniProt:K4C399	MapMan:2.4.2.1.1	:	:	:	:

Description

No Description!

Coordinates

chr6:-:1218194..1222072

Molecular Weight (calculated)

54973.4 Da

IEP (calculated)

9.095

GRAVY (calculated)

-0.040

Length

495 amino acids

Sequence
(BLAST)

001: MPWFKNLIKI SKTITNQSSS YKSITPLASP LLTQFLQFTK HYSTNHHVVG LEATKSDQKP RIVVLGSGWA GCRLMKDIDT NIYDVVCVSP RNHMVFTPLL
101: ASTCVGTLEF RSVAEPIGRI QPAVSTQPTS YFFLANCNAI DFDNHMIQCQ TVTEGVETLE PWNFNVSYDK LVIASGAHAL TFGIKGVNEH ATFLREVHHA
201: QEIRRKLLLN LMLSDVPGVS EEEKRRLLHC VVVGGGPTGV EFSGELSDFI LKDVHQRYAH VKDYIHVTLI EANEILSSFD DRLRVYATKQ LTKSGVRLVR
301: GLVQDVQPEK IILSDGTNVP YGLLVWSTGV GPSPFVNSLD IPKAKGRIGI DEWLRVPSVQ DVYSIGDCSG FLESTGRQVL PALAQVAERQ GKYLASLLNK
401: VGKEGGGHAN CAQNINLGDP FVYKHLGSMA TIGRYKALVD LRESKEAKGV SLAGFTSFFV WRSAYLTRVV SKRNKFYVLI NWLTTLVFGR DISRI

Best Arabidopsis Sequence Match ( AT2G29990.1 )
(BLAST)

001: MFMIKNLTRI SPNTSSIITR FRNSGSSSLS YTLASRFCTA QETQIQSPAK IPNDVDRSQY SGLPPTREGE KPRVVVLGSG WAGCRLMKGI DTNLYDVVCV
101: SPRNHMVFTP LLASTCVGTL EFRSVAEPIS RIQPAISREP GSFFFLANCS RLDADAHEVH CETLTDGLNT LKPWKFKIAY DKLVIASGAE ASTFGIHGVM
201: ENAIFLREVH HAQEIRRKLL LNLMLSDTPG ISKEEKRRLL HCVVVGGGPT GVEFSGELSD FIMKDVRQRY AHVKDDIHVT LIEARDILSS FDDRLRRYAI
301: KQLNKSGVRF VRGIVKDVQS QKLILDDGTE VPYGLLVWST GVGPSPFVRS LGLPKDPTGR IGIDEWMRVP SVQDVFAIGD CSGYLETTGK PTLPALAQVA
401: EREGKYLANL LNAIGKGNGG RANSAKEIEL GVPFVYKHLG SMATIGRYKA LVDLRESKDA KGISMTGFVS WFIWRSAYLT RVISWRNRFY VAINWFTTFV
501: FGRDISRI

Arabidopsis Description

NDA2Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80874]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.