Factsheet for PGSC0003DMT400010678

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid

Predictor Summary:

plastid 4
peroxisome 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g007160.2.1	Tomato	plastid	97.98	97.98
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	64.44	78.57
CDY70466	Canola	mitochondrion, peroxisome	54.34	76.86
VIT_19s0027g01030.t01	Wine grape	cytosol	45.05	75.34
KRH17048	Soybean	mitochondrion	72.93	74.43
KRH72693	Soybean	mitochondrion	72.12	73.61
KRH30292	Soybean	mitochondrion	74.95	72.89
KRG98274	Soybean	mitochondrion	74.34	72.73
VIT_06s0004g06760.t01	Wine grape	plastid	73.13	72.55
Bra022768.1-P	Field mustard	mitochondrion	71.92	70.63
CDX84870	Canola	mitochondrion	71.92	70.63
EES01700	Sorghum	mitochondrion	71.72	70.58
AT2G29990.1	Thale cress	mitochondrion	72.32	70.47
Os01t0830100-01	Rice	mitochondrion	64.85	70.39
HORVU3Hr1G110990.1	Barley	peroxisome	13.33	70.21
CDY15606	Canola	plastid	71.52	70.1
Bra030676.1-P	Field mustard	plastid	71.52	70.1
TraesCS3B01G382500.1	Wheat	mitochondrion	70.91	70.06
AT1G07180.1	Thale cress	mitochondrion	72.12	70.0
CDY10256	Canola	mitochondrion	71.92	69.94
TraesCS3D01G343900.1	Wheat	mitochondrion	70.71	69.86
TraesCS3A01G349900.1	Wheat	mitochondrion	70.71	69.86
CDX86494	Canola	mitochondrion, peroxisome	71.11	69.57
Bra015560.1-P	Field mustard	mitochondrion	71.31	69.35
CDY06685	Canola	mitochondrion	70.91	68.96
Zm00001d012464_P001	Maize	mitochondrion	71.31	67.24
HORVU3Hr1G087950.4	Barley	endoplasmic reticulum, vacuole	21.62	66.05
HORVU3Hr1G087850.7	Barley	peroxisome	69.7	65.84
HORVU2Hr1G022740.3	Barley	extracellular	18.18	65.69
HORVU2Hr1G101830.2	Barley	extracellular	19.6	61.01
PGSC0003DMT400057603	Potato	mitochondrion	67.27	60.88
HORVU7Hr1G040660.4	Barley	cytosol	22.63	57.14
HORVU7Hr1G076330.1	Barley	mitochondrion, peroxisome	32.12	56.99
HORVU5Hr1G020920.4	Barley	extracellular	19.8	56.0
HORVU5Hr1G056500.3	Barley	extracellular	19.39	54.86
PGSC0003DMT400055796	Potato	mitochondrion	36.97	31.72
PGSC0003DMT400057712	Potato	mitochondrion	36.16	30.65
PGSC0003DMT400047210	Potato	cytosol	16.77	26.95

Protein Annotations

MapMan:2.4.2.1.1	Gene3D:3.50.50.100	EMBL:AEWC01009701	EMBL:AJ245861	ProteinID:CAB52796	ProteinID:CAB52796.1
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003959	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005759
GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0055114
InterPro:IPR036188	UniProt:M0ZYF3	PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG400004168	PGSC:PGSC0003DMG400004168	EnsemblPlants:PGSC0003DMT400010678
PRINTS:PR00368	PANTHER:PTHR43706	PANTHER:PTHR43706:SF14	SUPFAM:SSF51905	UniParc:UPI000295631F	:

Description

NDA1Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:M0ZYF3]

Coordinates

chr6:+:3238431..3242949

Molecular Weight (calculated)

54914.3 Da

IEP (calculated)

8.961

GRAVY (calculated)

-0.021

Length

495 amino acids

Sequence
(BLAST)

001: MPWFKNLIKI SKTITNQSSS YKSITPLASP LLAQFLQFTK QYSTNDHVVG LEATKSDQKP RIVVLGSGWA GCRLMKDIDT NIYDVVCVSP RNHMVFTPLL
101: ASTCVGTLEF RSVAEPIGRI QPAVSTQPAS YFFLANCNAI DFDNHMIQCQ TVTEGVETLE PWKFNVSYDK LVIASGAHAL TFGIKGVNEH ATFLREVHHA
201: QEIRRKLLLN LMLSDVPGVS EEEKRRLLHC VVVGGGPTGV EFSGELSDFI LKDVHQRYAH VKDYIHVTLI EANEILSSFD DRLRVYATNQ LTKSGVRLVR
301: GLVQHVQPDK IILSDGTNVP YGLLVWSTGV GPSPFVNSLD IPKAKGRIGI DEWLRVPSVQ DVYSIGDCSG FLESTGRQVL PALAQVAERQ GKYLASLLNK
401: VGKEGGGHAN CAQNINLGDP FVYKHLGSMA TIGRYKALVD LRESKEAKGV SLAGFTSFFV WRSAYLTRVV SWRNKIYVLI NWLTTLVFGR DISRI

Best Arabidopsis Sequence Match ( AT1G07180.1 )
(BLAST)

001: MLWIKNLARI SQTTSSSVGN VFRNPESYTL SSRFCTALQK QQVTDTVQAK EDVVNALEPQ RYDGLAPTKE GEKPRVLVLG SGWAGCRVLK GIDTSIYDVV
101: CVSPRNHMVF TPLLASTCVG TLEFRSVAEP ISRIQPAISR EPGSYYFLAN CSKLDADNHE VHCETVTEGS STLKPWKFKI AYDKLVLACG AEASTFGING
201: VLENAIFLRE VHHAQEIRRK LLLNLMLSEV PGIGEDEKKR LLHCVVVGGG PTGVEFSGEL SDFIMKDVRQ RYSHVKDDIR VTLIEARDIL SSFDDRLRHY
301: AIKQLNKSGV KLVRGIVKEV KPQKLILDDG TEVPYGPLVW STGVGPSSFV RSLDFPKDPG GRIGIDEWMR VPSVQDVFAI GDCSGYLEST GKSTLPALAQ
401: VAEREGKYLA NLFNVMGKAG GGRANSAKEM ELGEPFVYKH LGSMATIGRY KALVDLRESK EGKGISMAGF LSWFIWRSAY LTRVVSWRNR FYVAINWLTT
501: FVFGRDISRI

Arabidopsis Description

NDA1Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GWA1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.