Factsheet for VIT_06s0004g06760.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g01030.t01	Wine grape	cytosol	54.31	91.55
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	63.93	78.57
KRH72693	Soybean	mitochondrion	76.35	78.56
KRH17048	Soybean	mitochondrion	76.15	78.35
CDY70466	Canola	mitochondrion, peroxisome	53.71	76.57
KRG98274	Soybean	mitochondrion	75.15	74.11
PGSC0003DMT400010678	Potato	mitochondrion, peroxisome, plastid	72.55	73.13
KRH30292	Soybean	mitochondrion	74.55	73.08
Solyc06g007160.2.1	Tomato	plastid	72.34	72.93
Bra022768.1-P	Field mustard	mitochondrion	72.34	71.63
CDX84870	Canola	mitochondrion	72.34	71.63
AT2G29990.1	Thale cress	mitochondrion	72.75	71.46
AT1G07180.1	Thale cress	mitochondrion	71.94	70.39
CDY10256	Canola	mitochondrion	71.74	70.33
HORVU3Hr1G110990.1	Barley	peroxisome	13.23	70.21
EES01700	Sorghum	mitochondrion	70.74	70.18
Bra015560.1-P	Field mustard	mitochondrion	71.54	70.14
TraesCS3A01G349900.1	Wheat	mitochondrion	70.34	70.06
Os01t0830100-01	Rice	mitochondrion	63.93	69.96
TraesCS3D01G343900.1	Wheat	mitochondrion	70.14	69.86
TraesCS3B01G382500.1	Wheat	mitochondrion	70.14	69.86
CDX86494	Canola	mitochondrion, peroxisome	70.74	69.76
CDY06685	Canola	mitochondrion	71.14	69.74
CDY15606	Canola	plastid	70.34	69.5
Bra030676.1-P	Field mustard	plastid	70.14	69.31
Zm00001d012464_P001	Maize	mitochondrion	70.34	66.86
HORVU3Hr1G087950.4	Barley	endoplasmic reticulum, vacuole	21.44	66.05
HORVU3Hr1G087850.7	Barley	peroxisome	68.34	65.08
HORVU2Hr1G022740.3	Barley	extracellular	17.43	63.5
VIT_00s0301g00090.t01	Wine grape	mitochondrion	66.33	60.62
HORVU7Hr1G076330.1	Barley	mitochondrion, peroxisome	32.87	58.78
HORVU2Hr1G101830.2	Barley	extracellular	18.44	57.86
HORVU7Hr1G040660.4	Barley	cytosol	22.65	57.65
HORVU5Hr1G020920.4	Barley	extracellular	19.44	55.43
HORVU5Hr1G056500.3	Barley	extracellular	18.84	53.71
VIT_00s2648g00010.t01	Wine grape	mitochondrion, peroxisome, plastid	19.24	41.74
VIT_00s2376g00010.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	16.23	38.03
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	35.87	31.13
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	33.87	29.29

Protein Annotations

EntrezGene:100248473	wikigene:100248473	MapMan:2.4.2.1.1	Gene3D:3.50.50.100	ProteinID:CBI15939	ProteinID:CBI15939.3
UniProt:D7SJW3	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036188	EntrezGene:LOC100248473
wikigene:LOC100248473	PFAM:PF07992	PRINTS:PR00368	PANTHER:PTHR43706	PANTHER:PTHR43706:SF14	SUPFAM:SSF51905
UniParc:UPI00015C796F	ArrayExpress:VIT_06s0004g06760	EnsemblPlantsGene:VIT_06s0004g06760	EnsemblPlants:VIT_06s0004g06760.t01	RefSeq:XP_002277505	RefSeq:XP_002277505.1
RefSeq:XP_003634801	RefSeq:XP_003634801.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:7458877..7462759

Molecular Weight (calculated)

55380.7 Da

IEP (calculated)

9.718

GRAVY (calculated)

-0.115

Length

499 amino acids

Sequence
(BLAST)

001: MAWFRNLVQL SSLKSSLRSR SATTPFPNTQ FVSILQFSSQ PNSEPTRHVP SSGLGPTSSK EKPRVVVLGS GWAGCRAMKG LDTNIYDVVC VSPRNHMVFT
101: PLLASTCVGT LEFRSVAEPI ARIQPVISRE TGSYFFLANC NRVDPDNHVV HCQTLTNGAN VREPWDFEIS YDKLIIASGS MPLTFGIHGV EEHAFFLREV
201: HHAQEIRRKL LLNLMLSDVP GISEAEKQRL LHCVVVGGGP TGVEFSGELS DFITRDVHQR YAHVKNYIHV TLIEANEILS SFDDRLRHYA TRQLTKSGVR
301: LVRGIVKDVK VDKIILNNGT EVPYGLLVWS TGVGPSSFVK SMEVPKSPGG RIGIDEWLRV PSAQDIFAIG DCSGFLESTG KPVLPALAQV AERQGKYLAE
401: QLNRIGKAGG GYANRARDME FGEPFVYKHL GSMASLGRYK ALVDLRQGKE GKGLSLAGFT SWIIWRSAYL TRVLSWRNRL YVAINWATTF VFGRDISRI

Best Arabidopsis Sequence Match ( AT1G07180.1 )
(BLAST)

001: MLWIKNLARI SQTTSSSVGN VFRNPESYTL SSRFCTALQK QQVTDTVQAK EDVVNALEPQ RYDGLAPTKE GEKPRVLVLG SGWAGCRVLK GIDTSIYDVV
101: CVSPRNHMVF TPLLASTCVG TLEFRSVAEP ISRIQPAISR EPGSYYFLAN CSKLDADNHE VHCETVTEGS STLKPWKFKI AYDKLVLACG AEASTFGING
201: VLENAIFLRE VHHAQEIRRK LLLNLMLSEV PGIGEDEKKR LLHCVVVGGG PTGVEFSGEL SDFIMKDVRQ RYSHVKDDIR VTLIEARDIL SSFDDRLRHY
301: AIKQLNKSGV KLVRGIVKEV KPQKLILDDG TEVPYGPLVW STGVGPSSFV RSLDFPKDPG GRIGIDEWMR VPSVQDVFAI GDCSGYLEST GKSTLPALAQ
401: VAEREGKYLA NLFNVMGKAG GGRANSAKEM ELGEPFVYKH LGSMATIGRY KALVDLRESK EGKGISMAGF LSWFIWRSAY LTRVVSWRNR FYVAINWLTT
501: FVFGRDISRI

Arabidopsis Description

NDA1Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GWA1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.