Factsheet for VIT_00s2376g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 3
plastid 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome, secretory
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2648g00010.t01	Wine grape	mitochondrion, peroxisome, plastid	89.67	83.04
Os08t0141400-01	Rice	mitochondrion	68.08	40.62
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	77.0	28.52
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	73.71	27.21
GSMUA_Achr3P22940_001	Banana	mitochondrion	72.77	26.77
TraesCS7D01G303500.1	Wheat	golgi	68.08	25.17
TraesCS7B01G206900.1	Wheat	mitochondrion	68.08	25.17
EES14522	Sorghum	mitochondrion	68.54	25.13
TraesCS7A01G306600.1	Wheat	mitochondrion	67.61	25.0
GSMUA_Achr4P33660_001	Banana	mitochondrion	67.14	24.7
Zm00001d043266_P002	Maize	mitochondrion	66.2	24.39
Os05t0331200-01	Rice	mitochondrion	65.73	24.35
Zm00001d049597_P001	Maize	mitochondrion	67.14	24.16
TraesCS3D01G314700.1	Wheat	mitochondrion	64.79	24.08
TraesCS3A01G316500.1	Wheat	mitochondrion	64.79	24.08
TraesCS3B01G350200.1	Wheat	mitochondrion	64.32	24.04
Zm00001d012615_P001	Maize	mitochondrion	64.32	23.7
EES01568	Sorghum	mitochondrion	63.85	23.53
VIT_06s0004g06760.t01	Wine grape	plastid	38.03	16.23
VIT_00s0301g00090.t01	Wine grape	mitochondrion	39.44	15.38
GSMUA_Achr10P...	Banana	mitochondrion	67.61	14.72
VIT_19s0027g01030.t01	Wine grape	cytosol	18.78	13.51
Zm00001d004457_P001	Maize	mitochondrion	0.94	1.24

Protein Annotations

MapMan:2.4.2.1.2	Gene3D:3.50.50.100	ProteinID:CCB57478	ProteinID:CCB57478.1	UniProt:F6HS19	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	EMBL:FN596193	GO:GO:0003674	GO:GO:0003824	GO:GO:0003955	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019646	GO:GO:0055114	InterPro:IPR036188
PFAM:PF07992	PRINTS:PR00368	PANTHER:PTHR43706	PANTHER:PTHR43706:SF5	SUPFAM:SSF51905	UniParc:UPI0002108B78
ArrayExpress:VIT_00s2376g00010	EnsemblPlantsGene:VIT_00s2376g00010	EnsemblPlants:VIT_00s2376g00010.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:41819261..41821225

Molecular Weight (calculated)

23772.3 Da

IEP (calculated)

6.764

GRAVY (calculated)

-0.231

Length

213 amino acids

Sequence
(BLAST)

001: MLLFFFSGGG LLAYSESKSY PGVRSLGSSE DDNKKKRVVV LGTGWAGTSF LKNLNNSSYD VQVVSPRNYF AFTPLLPSVT CGSVEARSIV EPIRNIVKKK
101: NVEIHFWEAE CIKIDAENKK VYCKSSQDTN LNGEEEFVVD YDYLVIAMGA RSNTFNTPGV VENCHFLKEV EDAQRIRRSV IDCFERASLP NLTDEERKRI
201: LHFVVVGGGP TGV

Best Arabidopsis Sequence Match ( AT4G05020.2 )
(BLAST)

001: MRNFSVFERF SKAFKDHPSL TRILVVSTIS GGGLIAYSEA NASYGANGGA VVETGTKKKK VVLLGTGWAG TSFLKNLNNS QYEVQIISPR NYFAFTPLLP
101: SVTCGTVEAR SVVEPIRNIG RKNVDTSYLE AECFKIDPAS KKVYCRSKQG LSSNGKKEFS VDYDYLVIAT GAQSNTFNIP GVEENCHFLK EVEDAQRIRK
201: TVIDSFEKAS LPELSDEERK RILHFVVVGG GPTGVEFAAE LHDFVTEDLV SLYPRAKGSV RITLLEAADH ILTMFDKRIT EFAEEKFSRD GIDVKLGSMV
301: TKVNEKDISA KTKGGEVSSI PYGMIVWSTG IGTRPVIKDF MKQIGQGNRR ALATDEWLRV EGTDNIYALG DCATINQRKV MEDVSAIFSK ADKDKSGTLT
401: LKEFQEAMDD ICVRYPQVEL YLKSKRMRGI ADLLKEAETD DVSKNNIELK IEEFKSALSQ VDSQVKFLPA TAQVAAQQGA YLAKCFDRME ECEKSPEGPI
501: RMRGEGRHRF RPFRIWKLRG ISKTLSQDTT ESCALDHKGV GKMELIPYII RYRHLGQFAP LGGEQTAAQL PGDWVSIGHS SQWLWYSVYA SKQVSWRTRV
601: LVVSDWMRRF IFGRDSSSI

Arabidopsis Description

NDB2NAD(P)H dehydrogenase B2 [Source:UniProtKB/TrEMBL;Acc:F4JGL5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.