Factsheet for VIT_00s0301g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P00100_001	Banana	mitochondrion	62.09	83.91
KRH49960	Soybean	mitochondrion	76.56	76.0
Solyc02g078900.2.1	Tomato	plastid	75.64	75.5
KRH41912	Soybean	mitochondrion	75.27	74.73
PGSC0003DMT400057603	Potato	mitochondrion	74.73	74.59
GSMUA_Achr5P28430_001	Banana	plastid	74.36	70.49
VIT_19s0027g01030.t01	Wine grape	cytosol	36.63	67.57
HORVU2Hr1G040130.1	Barley	peroxisome	61.17	66.93
Os07t0564500-01	Rice	mitochondrion	68.31	66.37
VIT_06s0004g06760.t01	Wine grape	plastid	60.62	66.33
TraesCS2B01G230300.1	Wheat	plastid	67.95	66.25
TraesCS2A01G203200.1	Wheat	plastid	67.77	66.07
TraesCS2D01G212500.1	Wheat	plastid	67.77	66.07
EER97387	Sorghum	mitochondrion	66.85	64.49
Zm00001d021804_P001	Maize	mitochondrion	60.44	54.55
VIT_00s2648g00010.t01	Wine grape	mitochondrion, peroxisome, plastid	18.5	43.91
VIT_00s2376g00010.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	15.38	39.44
VIT_12s0057g00250.t01	Wine grape	mitochondrion, peroxisome, plastid	33.15	31.48
VIT_12s0057g00260.t01	Wine grape	mitochondrion, plasma membrane	31.68	29.98

Protein Annotations

EntrezGene:100253444	wikigene:100253444	MapMan:2.4.2.1.1	Gene3D:3.50.50.100	ProteinID:CBI18598	ProteinID:CBI18598.3
UniProt:D7SSG5	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EMBL:FN594977	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036188	EntrezGene:LOC100253444
wikigene:LOC100253444	PFAM:PF07992	PRINTS:PR00368	PANTHER:PTHR43706	PANTHER:PTHR43706:SF4	SUPFAM:SSF51905
UniParc:UPI0001BE13C5	ArrayExpress:VIT_00s0301g00090	EnsemblPlantsGene:VIT_00s0301g00090	EnsemblPlants:VIT_00s0301g00090.t01	RefSeq:XP_002262771	RefSeq:XP_002262771.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:22181159..22184305

Molecular Weight (calculated)

60274.1 Da

IEP (calculated)

9.056

GRAVY (calculated)

-0.157

Length

546 amino acids

Sequence
(BLAST)

001: MALARAARSG FFRSRGAIPS YSCGKDVFFD AGHTQKFLPS FENITSGGNL SQLSSVRKVD ITSFGSRGIR ATPQYQSPYA ERVTEESDLE NDSPSYPGLE
101: ATKPGEKPRV VVLGTGWAAC RFLKGLDTKI YDVVCIAPRN HMVFTPLLAS TCVGTLEFRS VTEPVGRIQS ALATEPNSYF YLASCTSIDT NKHEVYCETV
201: GNVGLPHEPY RFRVAYDKLV IASGAEPLTF GIKGVNEHAF FLREVNHAQE IRKKLLLNLM LSESPGISEE EKKRLLHCVV IGGGPTGVEF SGELSDFIMR
301: DVRERYSTHV KDYIQVTLIE ANEILSSFEV GLRQYATNHL TKSGVHFKRG VVKEVHAKKI VLSDGTDVPY GLLVWSTGVG PSEFVKSLNV SKSPGGRIGV
401: DEWFRIPSVE DVFALGDCAG FLEQTGKQVL PALAQVAERQ GKFLVELFNR IGKENGGKAL SGKDIPMGEP FVYKHLGSMA SVGRYKALVD LRQSKDARGI
501: SHAGFISWLV WRSAYLTRVV SWRNRFYVAV NWATTLVFGR DNSRIG

Best Arabidopsis Sequence Match ( AT2G29990.1 )
(BLAST)

001: MFMIKNLTRI SPNTSSIITR FRNSGSSSLS YTLASRFCTA QETQIQSPAK IPNDVDRSQY SGLPPTREGE KPRVVVLGSG WAGCRLMKGI DTNLYDVVCV
101: SPRNHMVFTP LLASTCVGTL EFRSVAEPIS RIQPAISREP GSFFFLANCS RLDADAHEVH CETLTDGLNT LKPWKFKIAY DKLVIASGAE ASTFGIHGVM
201: ENAIFLREVH HAQEIRRKLL LNLMLSDTPG ISKEEKRRLL HCVVVGGGPT GVEFSGELSD FIMKDVRQRY AHVKDDIHVT LIEARDILSS FDDRLRRYAI
301: KQLNKSGVRF VRGIVKDVQS QKLILDDGTE VPYGLLVWST GVGPSPFVRS LGLPKDPTGR IGIDEWMRVP SVQDVFAIGD CSGYLETTGK PTLPALAQVA
401: EREGKYLANL LNAIGKGNGG RANSAKEIEL GVPFVYKHLG SMATIGRYKA LVDLRESKDA KGISMTGFVS WFIWRSAYLT RVISWRNRFY VAINWFTTFV
501: FGRDISRI

Arabidopsis Description

NDA2Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80874]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.