Factsheet for PGSC0003DMT400057603

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078900.2.1	Tomato	plastid	97.81	97.81
GSMUA_Achr7P00100_001	Banana	mitochondrion	59.05	79.95
VIT_00s0301g00090.t01	Wine grape	mitochondrion	74.59	74.73
KRH49960	Soybean	mitochondrion	72.58	72.18
KRH41912	Soybean	mitochondrion	72.21	71.82
PGSC0003DMT400010678	Potato	mitochondrion, peroxisome, plastid	60.88	67.27
GSMUA_Achr5P28430_001	Banana	plastid	68.92	65.45
TraesCS2D01G212500.1	Wheat	plastid	66.73	65.18
TraesCS2A01G203200.1	Wheat	plastid	66.73	65.18
TraesCS2B01G230300.1	Wheat	plastid	66.54	65.0
HORVU2Hr1G040130.1	Barley	peroxisome	58.68	64.33
Os07t0564500-01	Rice	mitochondrion	66.0	64.23
EER97387	Sorghum	mitochondrion	64.9	62.72
Zm00001d021804_P001	Maize	mitochondrion	58.32	52.73
PGSC0003DMT400057712	Potato	mitochondrion	32.91	30.82
PGSC0003DMT400055796	Potato	mitochondrion	31.26	29.64
PGSC0003DMT400047210	Potato	cytosol	14.08	25.0

Protein Annotations

EntrezGene:102582385	MapMan:2.4.2.1.1	Gene3D:3.50.50.100	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036188
UniProt:M1C1C6	PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG400022368	PGSC:PGSC0003DMG400022368	EnsemblPlants:PGSC0003DMT400057603	PRINTS:PR00368
PANTHER:PTHR43706	PANTHER:PTHR43706:SF4	SUPFAM:SSF51905	UniParc:UPI00029630DC	RefSeq:XP_006347098.1	SEG:seg

Description

Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400022368]

Coordinates

chr2:-:34558068..34563142

Molecular Weight (calculated)

60338.7 Da

IEP (calculated)

9.166

GRAVY (calculated)

-0.128

Length

547 amino acids

Sequence
(BLAST)

001: MALVRAARSS FRRSGGAIGN YASERNIFCE GISPLRHPAP VFEKAVTGFN SSYIPSTQMI NQLSFGNRGM KFTPQYQFPH AEAQTVGGSD SKNERSSYPG
101: LEATKQGEKP RVVVLGSGWA ACRFLKGIDT TMYDVVCIAP RNHMVFTPLL ASTCVGTLEF RSVAEPVTQI QKALAKDPNS YFFLASCTGV DADKHEVYCQ
201: TVGDRGVSHE HYRFKVAYDK LVIASGAEPL TFGIKGVEEH AFFLREVQNA QEIRKKLLMN LMVSETPGIS EEEKERLLHC VVIGGGPTGV EFSGELSDFI
301: MRDVRERYAH VKNYIHVTLI EANEILSSFD VGLREYATKH LTKVGVRLVH GVVKEVHPDK IVLSDGSDVP YGLLVWSTGV GPSKFIKSLD IPKSPGGRIG
401: IDEWLRVPSV EDVFAIGDCA GFLEQTGKPV LPALAQVAER QGKYLVKLFT DIGKQNGGKA LSAKDITLGD PFVYKHLGSM ATVGRYKALV DLRQAKGEKG
501: VSLAGFMSWF IWRSAYLTRV ISWRNRFYVA MNWGTTLIFG RDNTKIG

Best Arabidopsis Sequence Match ( AT2G29990.1 )
(BLAST)

001: MFMIKNLTRI SPNTSSIITR FRNSGSSSLS YTLASRFCTA QETQIQSPAK IPNDVDRSQY SGLPPTREGE KPRVVVLGSG WAGCRLMKGI DTNLYDVVCV
101: SPRNHMVFTP LLASTCVGTL EFRSVAEPIS RIQPAISREP GSFFFLANCS RLDADAHEVH CETLTDGLNT LKPWKFKIAY DKLVIASGAE ASTFGIHGVM
201: ENAIFLREVH HAQEIRRKLL LNLMLSDTPG ISKEEKRRLL HCVVVGGGPT GVEFSGELSD FIMKDVRQRY AHVKDDIHVT LIEARDILSS FDDRLRRYAI
301: KQLNKSGVRF VRGIVKDVQS QKLILDDGTE VPYGLLVWST GVGPSPFVRS LGLPKDPTGR IGIDEWMRVP SVQDVFAIGD CSGYLETTGK PTLPALAQVA
401: EREGKYLANL LNAIGKGNGG RANSAKEIEL GVPFVYKHLG SMATIGRYKA LVDLRESKDA KGISMTGFVS WFIWRSAYLT RVISWRNRFY VAINWFTTFV
501: FGRDISRI

Arabidopsis Description

NDA2Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80874]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.