CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41931	Soybean	mitochondrion	98.1	98.1
KRH21576	Soybean	mitochondrion	86.38	86.98
KRH10751	Soybean	mitochondrion	86.38	86.98
KRH22445	Soybean	peroxisome	7.07	80.39
PGSC0003DMT400057712	Potato	mitochondrion	77.59	77.05
Solyc02g079170.2.1	Tomato	nucleus	77.41	76.88
Bra029549.1-P	Field mustard	mitochondrion	74.14	74.27
CDY16620	Canola	mitochondrion	74.14	74.27
CDY44749	Canola	mitochondrion	73.79	73.92
KRH62788	Soybean	cytosol	20.52	73.46
AT4G21490.1	Thale cress	cytosol, mitochondrion, peroxisome	72.93	72.93
KRH25488	Soybean	peroxisome	51.03	72.37
KRH56038	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	61.38	70.78
TraesCS7B01G206900.1	Wheat	mitochondrion	69.48	69.97
TraesCS7D01G303500.1	Wheat	golgi	69.48	69.97
AT4G05020.2	Thale cress	mitochondrion	74.66	69.95
TraesCS7A01G306600.1	Wheat	mitochondrion	69.14	69.62
GSMUA_Achr3P22940_001	Banana	mitochondrion	69.31	69.43
EES14522	Sorghum	mitochondrion	69.31	69.19
GSMUA_Achr4P33660_001	Banana	mitochondrion	68.79	68.91
Zm00001d049597_P001	Maize	mitochondrion	69.14	67.74
Zm00001d012615_P001	Maize	mitochondrion	66.72	66.95
EES01568	Sorghum	mitochondrion	66.21	66.44
Zm00001d043266_P002	Maize	mitochondrion	65.86	66.09
Os05t0331200-01	Rice	mitochondrion	65.52	66.09
TraesCS3B01G350200.1	Wheat	mitochondrion	64.48	65.61
TraesCS3D01G314700.1	Wheat	mitochondrion	64.66	65.44
TraesCS3A01G316500.1	Wheat	mitochondrion	64.31	65.1
KRH25490	Soybean	mitochondrion	64.14	64.92
Os08t0141400-01	Rice	mitochondrion	38.97	63.31
KRH26903	Soybean	mitochondrion	22.24	54.66
KRH56037	Soybean	extracellular, plasma membrane	29.14	50.15
GSMUA_Achr10P...	Banana	mitochondrion	68.62	40.7
KRH72693	Soybean	mitochondrion	30.17	36.08
KRH17048	Soybean	mitochondrion	29.66	35.46
KRH17976	Soybean	cytosol	11.55	34.54
KRG98274	Soybean	mitochondrion	29.48	33.79
KRH30292	Soybean	mitochondrion	29.66	33.79
KRH41912	Soybean	mitochondrion	30.17	31.82
KRH49960	Soybean	mitochondrion	30.17	31.82
Zm00001d004457_P001	Maize	mitochondrion	8.28	29.81

Protein Annotations

EntrezGene:100809915	MapMan:2.4.2.1.2	Gene3D:3.50.50.100	EMBL:ACUP02004648	ncoils:Coil	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EnsemblPlantsGene:GLYMA_07G189900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	UniProt:I1KLC9	InterPro:IPR002048	InterPro:IPR036188	ProteinID:KRH49944.1	EnsemblPlants:KRH49945
ProteinID:KRH49945	ProteinID:KRH49945.1	PFAM:PF07992	PRINTS:PR00368	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR43706	PANTHER:PTHR43706:SF5	SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF51905	UniParc:UPI0002337EDF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:35773709..35779370

Molecular Weight (calculated)

65194.9 Da

IEP (calculated)

7.720

GRAVY (calculated)

-0.285

Length

580 amino acids

Sequence
(BLAST)

001: MRSFTFFDRV SRAFRDHGSN FKLVLLCTTV SGGGIVAYGE AVAASEAAAA ATEKKKVVVL GTGWAGTSFL RNLDNPKYEV HVVSPRNYFA FTPLLPSVTC
101: GTVEARSIVE PVRNIFRKKK MDMQFSEAEC LKIDAAHRKV YCRSNISNNL NEKEEFVVDY DYLIIAVGAN VNTFNTPGVM ENCHFLKEVE DAQKIRRTVI
201: DCFERASLPS VSEEEKKRIL HFAIVGGGPT GVEFAASLHD YVTEDLVNIY PGIKDLVKIT LLEAGDHILS MFDKRITAFA EEKFGRDGID VKTGSMVVKV
301: SEKEISTKEM KNGGAITTIP YGMAVWSTGI GTRPFIRDFM SQIGQTNRRA IATDEWLRVE ATNNVYALGD CATINQRKVM EDIAAIFKKA DKDNSGTLTV
401: KEFQEVLDDI CERYPQVELY LKSQQMHNIA DLLKGSKEDV EKESIELNIE ELKTVLSKVD SQMKFLPATA QVASQQGTYL AKCFNRMEEC EKNPEGPIRF
501: RGEGRHRFKP FRYKHLGQFA PLGGEQTAAQ LPGDWVSIGH SSQWLWYSVY ASKQVSWRTR ALVVSDWTRR FIFGRDSSQI

Best Arabidopsis Sequence Match ( AT4G05020.1 )
(BLAST)

001: MRNFSVFERF SKAFKDHPSL TRILVVSTIS GGGLIAYSEA NASYGANGGA VVETGTKKKK VVLLGTGWAG TSFLKNLNNS QYEVQIISPR NYFAFTPLLP
101: SVTCGTVEAR SVVEPIRNIG RKNVDTSYLE AECFKIDPAS KKVYCRSKQG LSSNGKKEFS VDYDYLVIAT GAQSNTFNIP GVEENCHFLK EVEDAQRIRK
201: TVIDSFEKAS LPELSDEERK RILHFVVVGG GPTGVEFAAE LHDFVTEDLV SLYPRAKGSV RITLLEAADH ILTMFDKRIT EFAEEKFSRD GIDVKLGSMV
301: TKVNEKDISA KTKGGEVSSI PYGMIVWSTG IGTRPVIKDF MKQIGQGNRR ALATDEWLRV EGTDNIYALG DCATINQRKV MEDVSAIFSK ADKDKSGTLT
401: LKEFQEAMDD ICVRYPQVEL YLKSKRMRGI ADLLKEAETD DVSKNNIELK IEEFKSALSQ VDSQVKFLPA TAQVAAQQGA YLAKCFDRME ECEKSPEGPI
501: RMRGEGRHRF RPFRYRHLGQ FAPLGGEQTA AQLPGDWVSI GHSSQWLWYS VYASKQVSWR TRVLVVSDWM RRFIFGRDSS SI

Arabidopsis Description

NDB2NAD(P)H dehydrogenase B2 [Source:UniProtKB/TrEMBL;Acc:F4JGL5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.