Factsheet for VIT_07s0005g00680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g01710.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02350.1	VIT_01s0011g01710.t01	AT1G10180.1	23495664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68203	Soybean	endoplasmic reticulum	82.92	83.33
Solyc09g075280.1.1	Tomato	nucleus	82.79	82.59
KRH14016	Soybean	mitochondrion	82.67	81.15
Bra018558.1-P	Field mustard	cytosol	76.68	77.26
AT4G02350.1	Thale cress	cytosol	74.31	75.73
Bra036274.1-P	Field mustard	cytosol	73.82	75.41
CDY50392	Canola	cytosol	71.45	74.71
CDY65634	Canola	cytosol	71.07	74.22
GSMUA_Achr3P24060_001	Banana	cytosol	65.96	68.88
GSMUA_Achr8P06600_001	Banana	cytosol	60.1	61.72
Os01t0351300-01	Rice	plasma membrane	60.6	60.75
EES02923	Sorghum	cytosol, mitochondrion	61.35	60.74
Zm00001d040788_P001	Maize	cytosol, mitochondrion, plastid	61.22	60.62
TraesCS3A01G199000.2	Wheat	cytosol	60.85	60.55
Zm00001d009226_P001	Maize	mitochondrion	61.1	60.49
TraesCS3B01G232000.1	Wheat	cytosol	60.6	60.3
HORVU0Hr1G006630.1	Barley	cytosol	60.6	57.38
TraesCS3D01G205600.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	60.6	55.86
VIT_08s0040g00840.t01	Wine grape	cytosol	51.75	52.6

Protein Annotations

Gene3D:1.10.357.30	Gene3D:1.20.58.670	EntrezGene:100255615	wikigene:100255615	MapMan:22.6.3.7	ProteinID:CCB59974
ProteinID:CCB59974.1	ncoils:Coil	InterPro:EXOC6/Sec15	UniProt:F6HZ59	EMBL:FN596502	GO:GO:0000003
GO:GO:0000145	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006810	GO:GO:0006887	GO:GO:0006904
GO:GO:0007154	GO:GO:0008150	GO:GO:0009506	GO:GO:0009653	GO:GO:0009846	GO:GO:0009856
GO:GO:0009860	GO:GO:0009875	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049
GO:GO:0030154	GO:GO:0040007	GO:GO:0060321	GO:GO:0070062	EntrezGene:LOC100255615	wikigene:LOC100255615
PFAM:PF04091	PIRSF:PIRSF025007	PANTHER:PTHR12702	PANTHER:PTHR12702:SF1	UniParc:UPI00015CAE2D	ArrayExpress:VIT_07s0005g00680
EnsemblPlantsGene:VIT_07s0005g00680	EnsemblPlants:VIT_07s0005g00680.t01	unigene:Vvi.12440	RefSeq:XP_002271146	RefSeq:XP_002271146.1	RefSeq:XP_019076804.1
SEG:seg	:	:	:	:	:

Description

Exocyst complex component [Source:UniProtKB/TrEMBL;Acc:F6HZ59]

Coordinates

chr7:-:3332137..3336122

Molecular Weight (calculated)

90733.9 Da

IEP (calculated)

6.267

GRAVY (calculated)

-0.253

Length

802 amino acids

Sequence
(BLAST)

001: MQSSKMRRKV APAAADGDSS EKFDQLLLSS AICNNEDLGP FVRKAFTSGK PETLLHHLRH FARSKESEIE EVCKAHYQDF IMAVDDLRSL LSDVDSLKSS
101: LSNSNIKLQS VAGPLLSSLD AFVEARNISQ NVSLALESVR KCVKLADLCS RANLHLSNNN FYMALKCVDS IEGEFIDKTP SSTLRKMLEK QIPEIRSYIE
201: RKINKEFGDW LVEIRIVSRN LGQLAIGQAS SARQREEELR IKQRQAEEQT RLSLRDCVYA LEEEDDDDGL GDQGKDGYNN GSSGVLGFDL TSLYRAYHIH
301: QTLGLEDRFR QYYFENRKLQ LTSDFQVSSM TPFLESHQTF FAQIAGFFIV EDRVLRTSGG LILKMDVENL WETAVSKMCS VLEDQFSRMQ TANHLLLIKD
401: YVSLLGVTLR RYGYPVDPLL DVLSKHRDKY HELLLSDCRK QIGEVLAADK FEQMLMKKEY EYSMNVLSFQ LQTSDITPAF PFVAPFSSTV PDCCRIVRSF
501: IEDSVSFMSY GGQLEFYDVV KKYLDRLLNE VLDGALLKLT NTSIHGVSQA MQVAANMVVL ERACDFFFRH AAQLSGIPLR MAERGRRQFP LNNARDAAEE
601: MLSGLLKAKV DGFMTLIENV NWMADEPPQS GNEFVNEVII YLETLVSTAQ QILPAKVLKR VLQDVLSHIS EKIVGTLLGD SVKRFNVNAV MGIDVDIRLL
701: ESFADNQASL LSEADANQLK TALSEGRQLI NLLLSNHPEN FLNPVIRERS YNALDYRKVI AISEKLRDPS DRLFGTFGGR GLKQNPKKKS LDTLIKRLRD
801: VS

Best Arabidopsis Sequence Match ( AT4G02350.2 )
(BLAST)

001: MQSSKGRRKV GSTTAGAGID SAEKLDELLI SSAICNGEDL GPFVRKTFGT GKPETLLHHL KFFARSKESE IEEVCKAHYQ DFIHAVDDLK SLLSDVESLK
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS

Arabidopsis Description

SEC15BExocyst complex component SEC15B [Source:UniProtKB/Swiss-Prot;Acc:F4JHH5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.