Factsheet for Zm00001d009226_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d021828_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02350.1	Zm00001d021828_P004	AT1G10180.1	23495664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02923	Sorghum	cytosol, mitochondrion	96.17	96.17
Zm00001d040788_P001	Maize	cytosol, mitochondrion, plastid	95.93	95.93
Os01t0351300-01	Rice	plasma membrane	92.47	93.62
TraesCS3B01G232000.1	Wheat	cytosol	90.37	90.82
TraesCS3A01G199000.2	Wheat	cytosol	90.37	90.82
HORVU0Hr1G006630.1	Barley	cytosol	90.25	86.3
TraesCS3D01G205600.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	90.37	84.14
GSMUA_Achr3P24060_001	Banana	cytosol	62.22	65.62
VIT_07s0005g00680.t01	Wine grape	cytosol	60.49	61.1
Solyc09g075280.1.1	Tomato	nucleus	60.0	60.45
KRH68203	Soybean	endoplasmic reticulum	59.01	59.9
Bra018558.1-P	Field mustard	cytosol	58.77	59.8
GSMUA_Achr8P06600_001	Banana	cytosol	57.28	59.41
Bra036274.1-P	Field mustard	cytosol	56.91	58.73
KRH14016	Soybean	mitochondrion	59.01	58.51
CDY65634	Canola	cytosol	55.19	58.2
CDY50392	Canola	cytosol	54.81	57.89
AT4G02350.1	Thale cress	cytosol	55.56	57.18
Zm00001d047268_P001	Maize	cytosol	42.22	43.29
Zm00001d014179_P001	Maize	cytosol	39.26	40.36
Zm00001d034208_P001	Maize	cytosol	23.33	32.25
Zm00001d024189_P001	Maize	cytosol, golgi	15.43	26.1

Protein Annotations

Gene3D:1.10.357.30	Gene3D:1.20.58.670	MapMan:22.6.3.7	ProteinID:AQK91518.1	InterPro:EXOC6/Sec15	GO:GO:0000145
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887
GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	UniProt:K7VC94	PFAM:PF04091	PIRSF:PIRSF025007
PANTHER:PTHR12702	PANTHER:PTHR12702:SF1	UniParc:UPI0002209575	EnsemblPlantsGene:Zm00001d009226	EnsemblPlants:Zm00001d009226_P001	EnsemblPlants:Zm00001d009226_T001
SEG:seg	:	:	:	:	:

Description

Exocyst complex component SEC15B

Coordinates

chr8:-:44498799..44501231

Molecular Weight (calculated)

88736.5 Da

IEP (calculated)

7.107

GRAVY (calculated)

-0.045

Length

810 amino acids

Sequence
(BLAST)

001: MRRKLPGDAP LSAARAGHAS SASAPSEADL AQLSAAIAAG EDLGPFVRRA FACGRPEPLL ASLRGAARDR EAEIEELCRA HFHDFIRAVD DLRSLLADAD
101: ALKGSLSASH SVLLSSAAPL LASLESFLAA RLLAGNLSSA LASSRRCVRL LALAARANAH LQAGNHGLYL ALRAVDAIDR DLASGSELLP LPALRRMLLS
201: VVPAVRAHAE REISREFSDW MVSIRAASRH LGQVAIGRSA AARQRQEELR SKHRPLEGCI TLDDDGVGDL DDFAAAAATA DAADGAAAAS FDLTPLYRAM
301: HIHQTLALGE RFKKYYLENR KLQLTSDFDV IAATPFLESH QVFFSQIAGF FIVEDRVFRT GGGLTSRPDV DALWDAAVGK MVSVMEDNFS RMQTANHLLL
401: ITDYAALLSA TMRRYGYPVG MLLDVLAKHR DKYHDLLLAD CRRQVAEALA ADKFDQMLMR KEYEYSMNVL AFGIQSSDIT PAFPYVAPFS CTVPDICRIV
501: RSFIEDSVSF MAQGGGGDTY AAVKKYLGRI LSEVVDASIQ KLVDSGSGLS VSQAMQVAAN MSVMERACEF FTRHAAQLCG VPLRAVDRGR RDFPLRRSRD
601: AAEALLLRLL CAKVDEFMRQ SDGVNWMADD APPGGNEYAN EVIIYLETLT STAQQILPLP VLRRVLVAVL AHISERIIEL FLNDSVKRFN ANAVTGIDTD
701: LKMFETFAEG MSSLFVDSGQ ESAKNEMKAA LVEARQLVNL LMSNSPETFL NPVIREKSYN KLDYRKVAII SEKFRDTSES YFSTFGTRGA RQNPKKKSLD
801: TLIKRLREAS

Best Arabidopsis Sequence Match ( AT4G02350.2 )
(BLAST)

001: MQSSKGRRKV GSTTAGAGID SAEKLDELLI SSAICNGEDL GPFVRKTFGT GKPETLLHHL KFFARSKESE IEEVCKAHYQ DFIHAVDDLK SLLSDVESLK
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS

Arabidopsis Description

SEC15BExocyst complex component SEC15B [Source:UniProtKB/Swiss-Prot;Acc:F4JHH5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.