Factsheet for GSMUA_Achr3P24060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P17130_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02350.1	GSMUA_Achr7P17130_001	AT1G10180.1	23495664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P06600_001	Banana	cytosol	83.07	81.69
VIT_07s0005g00680.t01	Wine grape	cytosol	68.88	65.96
Solyc09g075280.1.1	Tomato	nucleus	66.93	63.93
Os01t0351300-01	Rice	plasma membrane	66.54	63.88
EES02923	Sorghum	cytosol, mitochondrion	66.54	63.09
Zm00001d040788_P001	Maize	cytosol, mitochondrion, plastid	66.28	62.84
KRH68203	Soybean	endoplasmic reticulum	65.23	62.78
TraesCS3B01G232000.1	Wheat	cytosol	65.36	62.28
TraesCS3A01G199000.2	Wheat	cytosol	65.36	62.28
Zm00001d009226_P001	Maize	mitochondrion	65.62	62.22
Bra018558.1-P	Field mustard	cytosol	63.8	61.56
KRH14016	Soybean	mitochondrion	65.23	61.32
Bra036274.1-P	Field mustard	cytosol	61.2	59.87
AT4G02350.1	Thale cress	cytosol	61.2	59.72
HORVU0Hr1G006630.1	Barley	cytosol	65.62	59.5
CDY50392	Canola	cytosol	58.72	58.8
CDY65634	Canola	cytosol	58.2	58.2
TraesCS3D01G205600.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	65.36	57.7
GSMUA_AchrUn_...	Banana	cytosol	51.3	51.3
GSMUA_Achr9P18870_001	Banana	cytosol	47.27	48.59
GSMUA_Achr1P23270_001	Banana	cytosol	46.61	45.26

Protein Annotations

Gene3D:1.10.357.30	Gene3D:1.20.58.670	MapMan:22.6.3.7	ncoils:Coil	InterPro:EXOC6/Sec15	GO:GO:0000145
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887
GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G24060_001	EnsemblPlants:GSMUA_Achr3P24060_001	EnsemblPlants:GSMUA_Achr3T24060_001
UniProt:M0SHC2	PFAM:PF04091	PIRSF:PIRSF025007	PANTHER:PTHR12702	PANTHER:PTHR12702:SF1	UniParc:UPI000294FFFF
SEG:seg	:	:	:	:	:

Description

Putative Probable exocyst complex component 6 [Source:GMGC_GENE;Acc:GSMUA_Achr3G24060_001]

Coordinates

chr3:+:24722286..24724880

Molecular Weight (calculated)

85757.8 Da

IEP (calculated)

8.603

GRAVY (calculated)

-0.212

Length

768 amino acids

Sequence
(BLAST)

001: MRRKVAPDST AMVAGGGGGG ATEAEQAQLF SAIRNGEDLG PFVRRAFASG RPESLLSSLR QFARSKEAEI EDVCKAHYQD FIRAVDDLRS LLSDVDSLKS
101: ALADSNDALQ SAAGPLLAAL DAYLEARSIA ANLAAALRAA RLCSRLFALL ARANEHLAAD HLYLALRAVA AAERDLLPAA PHPTIRRMLL RLIPAVRAHA
201: ERKISKEFSD WMVQIRVASR HLGQIAIGRA SAARQREEEL RARQRQAEEQ AHFRSGSTTA TPTLRDHSYS LRGDPGLDLT PLYRAYHIHK TLGLEERFRR
301: YYFENRKLQL TSDFQVSSLT PFLESHQTFF AQIAGFFIVE DRILRTGGGL IARPDVDALW ETAVTKMVSV LEDQFSRMQT ANHLLLIKDY VSLLGVTLHR
401: YRYAVDPLLD VLSKHRDKYH DLLLSDCRRQ VSEALAADKF EQMLMKKEYE YSMNVLSFQI QTSDITPAFP YVAPFSSSVP DLCRISRSFV EDSISFMSHG
501: GQLDIYPIVK KYLERLLGEV LDGSILRLIE SGGLGVSQAM QVAANMAVLE RACDFLFRHA AQLSGIPLRI AEKGKREFPL KKSRDATVEL LLGLLRKKID
601: DFLLLTDSIS WLADSPPPNG NDYSNEGVLS HISDKIMGLF LSDAVKRFNS NAVMGIDVDL KTFESFAENQ SHLFSDSDDS GANELKLALL EARQLVNLLM
701: SNNPENFLNA VIRERSYNKL DYKKVVAVTE KFRESSDRLF GTFGTRGAKQ NPKQKSLDAL IKRLKDAS

Best Arabidopsis Sequence Match ( AT4G02350.2 )
(BLAST)

001: MQSSKGRRKV GSTTAGAGID SAEKLDELLI SSAICNGEDL GPFVRKTFGT GKPETLLHHL KFFARSKESE IEEVCKAHYQ DFIHAVDDLK SLLSDVESLK
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS

Arabidopsis Description

SEC15BExocyst complex component SEC15B [Source:UniProtKB/Swiss-Prot;Acc:F4JHH5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.