Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G200500.1 | |
| TraesCS2B01G227800.1 | |
| TraesCS2D01G208300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02350.1 | TraesCS2A01G200500.1 | AT1G10180.1 | 23495664 |
| AT4G02350.1 | TraesCS2B01G227800.1 | AT1G10180.1 | 23495664 |
| AT4G02350.1 | TraesCS2D01G208300.1 | AT1G10180.1 | 23495664 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G232000.1 | Wheat | cytosol | 98.64 | 98.64 |
| HORVU0Hr1G006630.1 | Barley | cytosol | 97.15 | 92.44 |
| TraesCS3D01G205600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane, plastid | 99.5 | 92.18 |
| Os01t0351300-01 | Rice | plasma membrane | 90.2 | 90.88 |
| Zm00001d009226_P001 | Maize | mitochondrion | 90.82 | 90.37 |
| EES02923 | Sorghum | cytosol, mitochondrion | 90.57 | 90.12 |
| Zm00001d040788_P001 | Maize | cytosol, mitochondrion, plastid | 90.07 | 89.63 |
| GSMUA_Achr3P24060_001 | Banana | cytosol | 62.28 | 65.36 |
| VIT_07s0005g00680.t01 | Wine grape | cytosol | 60.55 | 60.85 |
| Solyc09g075280.1.1 | Tomato | nucleus | 59.55 | 59.7 |
| KRH68203 | Soybean | endoplasmic reticulum | 58.93 | 59.52 |
| GSMUA_Achr8P06600_001 | Banana | cytosol | 57.57 | 59.41 |
| Bra018558.1-P | Field mustard | cytosol | 58.56 | 59.3 |
| Bra036274.1-P | Field mustard | cytosol | 56.95 | 58.47 |
| KRH14016 | Soybean | mitochondrion | 58.68 | 57.89 |
| CDY65634 | Canola | cytosol | 55.09 | 57.81 |
| AT4G02350.1 | Thale cress | cytosol | 56.2 | 57.56 |
| CDY50392 | Canola | cytosol | 54.34 | 57.11 |
| TraesCS2A01G448600.1 | Wheat | cytosol | 41.44 | 42.33 |
| TraesCS4A01G025100.1 | Wheat | cytosol | 41.19 | 42.03 |
Protein Annotations
| Gene3D:1.10.357.30 | Gene3D:1.20.58.670 | MapMan:22.6.3.7 | InterPro:EXOC6/Sec15 | GO:GO:0000003 | GO:GO:0000145 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006904 | GO:GO:0007154 | GO:GO:0008150 |
| GO:GO:0009506 | GO:GO:0009653 | GO:GO:0009846 | GO:GO:0009856 | GO:GO:0009860 | GO:GO:0009875 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 |
| GO:GO:0060321 | GO:GO:0070062 | PFAM:PF04091 | PIRSF:PIRSF025007 | PANTHER:PTHR12702 | PANTHER:PTHR12702:SF1 |
| EnsemblPlantsGene:TraesCS3A01G199000 | EnsemblPlants:TraesCS3A01G199000.2 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:+:322878921..322881341
Molecular Weight (calculated)
88432.9 Da
IEP (calculated)
6.828
GRAVY (calculated)
-0.047
Length
806 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRKLAGDAP ASASAGGGSV PSEADLAQLS TAISAGEDLG PFVRRAFACG RPEPLLSSLR AVARDRESEI EELCRAHFHD FIRAVDDLRS LLADAEVLKG
101: SLSASHSALL SSSAPLLASL ESFLAARALA GNLSSALASS HRCVRLLALA ARANDHLQAG NHSLYLALRA VDAIDLNLAS GPDPLPLPAL RRMLLSLVPA
201: VRVHAEREIS REFADWMVSI RAASRHLGQV AIGRSAAARQ RQEELRSKHR PLEESITLDD DGAGDLDDFA AATATSDGSD GAAAASFDLT QLYRAMHIHQ
301: TLALGERFKK YYLENRKLQL TSDFDVIAAT PFLESHQVFF AQIAGFFIVE DRVFRTGGGL TSRVDVDALW EAAVGKMISV LEDNFSRMQT ANHLLLITDY
401: AALLAATMRR YSYPVGMLLD VLAKHRDKYH DLLLADCRRQ VAEALAADKF DQMLMRKEYE YSMNVLAFGI QSSDITPAFP YVAPFSCTVP DICRIVRSFI
501: EDSVSFMAHG GGGDTYAAVK KYLGRILSEV VNASIQKLVD SGSGLSVSQA MQVAANMSIM ERACEFFTRH AAQLCGVPLR AVERGRRDFP LRKSRDAAEA
601: LLLRLLCSKV DEFMRQSDGV NWIADDPPAG GNEYANEVTI YLETLTSTAQ QILPLPVLRR VLVAVLVHIS ERIIALFLND SVKRFSASAV IGIDTDLKMF
701: ESFADNMSSL FLDSHQDSAA SEMKSALVEP RQLVNLLMSN SPENFLNPVI REKSYNKLDY KKVAIISEKF RDTSESYFST FGTRGARQNP KKKSLDTLIK
801: RLREAS
101: SLSASHSALL SSSAPLLASL ESFLAARALA GNLSSALASS HRCVRLLALA ARANDHLQAG NHSLYLALRA VDAIDLNLAS GPDPLPLPAL RRMLLSLVPA
201: VRVHAEREIS REFADWMVSI RAASRHLGQV AIGRSAAARQ RQEELRSKHR PLEESITLDD DGAGDLDDFA AATATSDGSD GAAAASFDLT QLYRAMHIHQ
301: TLALGERFKK YYLENRKLQL TSDFDVIAAT PFLESHQVFF AQIAGFFIVE DRVFRTGGGL TSRVDVDALW EAAVGKMISV LEDNFSRMQT ANHLLLITDY
401: AALLAATMRR YSYPVGMLLD VLAKHRDKYH DLLLADCRRQ VAEALAADKF DQMLMRKEYE YSMNVLAFGI QSSDITPAFP YVAPFSCTVP DICRIVRSFI
501: EDSVSFMAHG GGGDTYAAVK KYLGRILSEV VNASIQKLVD SGSGLSVSQA MQVAANMSIM ERACEFFTRH AAQLCGVPLR AVERGRRDFP LRKSRDAAEA
601: LLLRLLCSKV DEFMRQSDGV NWIADDPPAG GNEYANEVTI YLETLTSTAQ QILPLPVLRR VLVAVLVHIS ERIIALFLND SVKRFSASAV IGIDTDLKMF
701: ESFADNMSSL FLDSHQDSAA SEMKSALVEP RQLVNLLMSN SPENFLNPVI REKSYNKLDY KKVAIISEKF RDTSESYFST FGTRGARQNP KKKSLDTLIK
801: RLREAS
001: MQSSKGRRKV GSTTAGAGID SAEKLDELLI SSAICNGEDL GPFVRKTFGT GKPETLLHHL KFFARSKESE IEEVCKAHYQ DFIHAVDDLK SLLSDVESLK
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS
Arabidopsis Description
SEC15BExocyst complex component SEC15B [Source:UniProtKB/Swiss-Prot;Acc:F4JHH5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.